Non-Coding RNA Search

Ss1.1-rnca17b_g19.5

Sequence:


               
               CCACTCCCAAGAGCAGCGAGCAATCTGCTCACAGGCGGAGCTCAACTGGGCAGGCGTGAG
GCCTGATATCTGGGCCCGAGCCGAGGTCCTCAGGCTGCAGGCCAGCTGTGTGCCCAGGAG
AGCATTAGAGGCAGAGCCAGGGCCTCTGAAGCAGAGCAACTACAGCACAGCGTCCACCCC
TCAGAGAGGATGCCTCCCTCCCACAGCAGCTGAGTGGGGACCAAGGCACAGGGGCACATG
CTTCTCCCCCTACTCGTGGGGCGGCCTTAGGCAAGTCATACCTCCCTGTGCCTCGGTCAT
TTCCTGTCCTAATGAGCAGGGCTGCCTGCCTCCTTGATCCCCTCACACCTCCCTCTGGCA
CGGCCTCAGCACCGAGGCCACCATCGCCCAACCACAAGTTTCATCAAGCCTGTGGACCCC
CCCTAGAGCCGGGCACAAGCCAGATTTTTCCATTTCGATTTTTAAAAAGGAAGAAAACAA
ACATCTCAGATATCTCTGTGGCATCTAGGCCTGGAAAGGACGGACACAGGGGTCACCCAA
ATCCCCGAGGTCCCACACCTGCCCTGGGCCCAGCCTCTTCCAGAGAAGCCAGGAGGCAGG
GGTCAGCTTCGGAAGAAAATGGTCATTTCATTTGTCCAAAACACCTTGAGTTTTAAGTAT
GAATATTAATCTTGATGCTTTTTAACTATTGTATTAACTTGCTGAGATTTAGAAATACTG
TTTTAAAAAAGAAAAAAAATTTTTTAATTTCTGTATTTTTTTCTGTATTATATCCTCATG
GGACATTAGGGGTTTTATATGGTAAACACACCTAAGGTTTTGGTAAAAACATCATCAAAT
ATATATCCAGTTGATTCTTCCCCAGAAGAAAAACAATCTTTACATCTGATAAAATATTTT
GAAAAGAGAGGTGTTTTTTTGTTTTGTTTTGTTTTGTTCCTTTACTGGTGCTGAAAGGAA
GGATGGATAACGAGGAAAAAATAAAACTGTGAGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACTCCCAAGAGCAGCGAGCAATCTGCTCACAGGCGGAGCTCAACTGGGCAGGCGTGAG
GCCTGATATCTGGGCCCGAGCCGAGGTCCTCAGGCTGCAGGCCAGCTGTGTGCCCAGGAG
AGCATTAGAGGCAGAGCCAGGGCCTCTGAAGCAGAGCAACTACAGCACAGCGTCCACCCC
TCAGAGAGGATGCCTCCCTCCCACAGCAGCTGAGTGGGGACCAAGGCACAGGGGCACATG
CTTCTCCCCCTACTCGTGGGGCGGCCTTAGGCAAGTCATACCTCCCTGTGCCTCGGTCAT
TTCCTGTCCTAATGAGCAGGGCTGCCTGCCTCCTTGATCCCCTCACACCTCCCTCTGGCA
CGGCCTCAGCACCGAGGCCACCATCGCCCAACCACAAGTTTCATCAAGCCTGTGGACCCC
CCCTAGAGCCGGGCACAAGCCAGATTTTTCCATTTCGATTTTTAAAAAGGAAGAAAACAA
ACATCTCAGATATCTCTGTGGCATCTAGGCCTGGAAAGGACGGACACAGGGGTCACCCAA
ATCCCCGAGGTCCCACACCTGCCCTGGGCCCAGCCTCTTCCAGAGAAGCCAGGAGGCAGG
GGTCAGCTTCGGAAGAAAATGGTCATTTCATTTGTCCAAAACACCTTGAGTTTTAAGTAT
GAATATTAATCTTGATGCTTTTTAACTATTGTATTAACTTGCTGAGATTTAGAAATACTG
TTTTAAAAAAGAAAAAAAATTTTTTAATTTCTGTATTTTTTTCTGTATTATATCCTCATG
GGACATTAGGGGTTTTATATGGTAAACACACCTAAGGTTTTGGTAAAAACATCATCAAAT
ATATATCCAGTTGATTCTTCCCCAGAAGAAAAACAATCTTTACATCTGATAAAATATTTT
GAAAAGAGAGGTGTTTTTTTGTTTTGTTTTGTTTTGTTCCTTTACTGGTGCTGAAAGGAA
GGATGGATAACGAGGAAAAAATAAAACTGTGAGGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-157, - strand, RNAz p=0.677088
               

               
               197-312, - strand, RNAz p=0.998398

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-157, - strand, RNAz p=0.677088
               

               
               197-312, - strand, RNAz p=0.998398

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-312, gnl|bosTau2|chr18 (14633177-14633470)
               

               
               1-312, gnl|Hg17|chr16 (66950674-66950416)
               


               
               314-996, gnl|bosTau2|chr18 (14633505-14634172)
               

               
               314-996, gnl|Hg17|chr16 (66950379-66949734)
               

               
               314-996, gnl|Mm7|chr8 (104852053-104851406)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-312, gnl|bosTau2|chr18 (14633177-14633470)
               

               
               1-312, gnl|Hg17|chr16 (66950674-66950416)
               


               
               314-996, gnl|bosTau2|chr18 (14633505-14634172)
               

               
               314-996, gnl|Hg17|chr16 (66950379-66949734)
               

               
               314-996, gnl|Mm7|chr8 (104852053-104851406)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               col (0.195008)
               

               
               cje (0.165235)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               cje (0.165235)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nca (0.136874)
               

               
               jej (0.0989218)

	40-157, - strand, RNAz p=0.677088
	197-312, - strand, RNAz p=0.998398

	1-312, gnl\|bosTau2\|chr18 (14633177-14633470)
	1-312, gnl\|Hg17\|chr16 (66950674-66950416)

	314-996, gnl\|bosTau2\|chr18 (14633505-14634172)
	314-996, gnl\|Hg17\|chr16 (66950379-66949734)
	314-996, gnl\|Mm7\|chr8 (104852053-104851406)

	col (0.195008)
	cje (0.165235)
	pty (0.142714)
	cst (0.140036)
	nca (0.136874)
	jej (0.0989218)