Ss1.1-rnca17b_k1.5
|
ATTGATTGATTTTATAATACATTCACTTTATAAATTTAAATTAAAATACATGATTCTGAT
TAAATACAGATTTATCTACTACTTCAGAATAAACCCATTTGTGTATTCAGTGATAAGCAT
TTATTAGCACCATTATGGGACAGGCATTATGCTCTAGGCTAAGGATTTAAGTTTGACAAG
CTACAGCTGACAGCCTTTGTTTAAACACAAACTTACTAGGTTTTCACATAATTGTGCATT
TAGAAGCATGAAGGCTTTATTGCTTTAACAATACTTTGAGGAGTTCCCACTCTGGCACAA
TGGAATCAGCAGCGTCTCTGCAGTCCAGGGTACAGGTTCGATCCCTGGTGTGGCACAGTG
GGTTAGAGGATCTGGCATCACTGCAGTTGTGGCATAGATCATAACTACAGTGTGGGTTGC
AACTTCCGCTTGGATCTGATCCCCGGCCTGGGAACTCCATACGCTTCAGGGCAGCCAAAA
AAAGAAAAAAACAATACTTTGAAACCACTGACACATATGTCCAATGTCTTGTCTCTTCCA
GTCAGATGATTGCCACTCTTGCTTTTGCAGAGGTCCAGCTGGAGTACGAGCCCAAGCCCT
GGATAGAGATGGAAATCTCATAGAAGATTTTGTATTTGATGGAGGAGTTGGGGATATTGG
AAATCGCATTCTTCATGTGAGAAATGCACCTTCTCCTGCTGCCACTTCTTCCCTTGCAAT
TTCTCTTATAGGGAGTTGGGCTTCTGGGCATCAGCTTCCCATAGGGTTGTAGCACAAATG
ATCTGAGTGGGTTCCAGCTTCTTTCCAGCAGGTGGACTTTACTGCTTCCCACGACTGGAG
TCCTTGGGCTCGAGGAGTAGCACCGACTCAGGATTGTCTGGGGAAGATCAAGAGGGGGGA
GAGTGTGTGTAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATTGATTGATTTTATAATACATTCACTTTATAAATTTAAATTAAAATACATGATTCTGAT
TAAATACAGATTTATCTACTACTTCAGAATAAACCCATTTGTGTATTCAGTGATAAGCAT
TTATTAGCACCATTATGGGACAGGCATTATGCTCTAGGCTAAGGATTTAAGTTTGACAAG
CTACAGCTGACAGCCTTTGTTTAAACACAAACTTACTAGGTTTTCACATAATTGTGCATT
TAGAAGCATGAAGGCTTTATTGCTTTAACAATACTTTGAGGAGTTCCCACTCTGGCACAA
TGGAATCAGCAGCGTCTCTGCAGTCCAGGGTACAGGTTCGATCCCTGGTGTGGCACAGTG
GGTTAGAGGATCTGGCATCACTGCAGTTGTGGCATAGATCATAACTACAGTGTGGGTTGC
AACTTCCGCTTGGATCTGATCCCCGGCCTGGGAACTCCATACGCTTCAGGGCAGCCAAAA
AAAGAAAAAAACAATACTTTGAAACCACTGACACATATGTCCAATGTCTTGTCTCTTCCA
GTCAGATGATTGCCACTCTTGCTTTTGCAGAGGTCCAGCTGGAGTACGAGCCCAAGCCCT
GGATAGAGATGGAAATCTCATAGAAGATTTTGTATTTGATGGAGGAGTTGGGGATATTGG
AAATCGCATTCTTCATGTGAGAAATGCACCTTCTCCTGCTGCCACTTCTTCCCTTGCAAT
TTCTCTTATAGGGAGTTGGGCTTCTGGGCATCAGCTTCCCATAGGGTTGTAGCACAAATG
ATCTGAGTGGGTTCCAGCTTCTTTCCAGCAGGTGGACTTTACTGCTTCCCACGACTGGAG
TCCTTGGGCTCGAGGAGTAGCACCGACTCAGGATTGTCTGGGGAAGATCAAGAGGGGGGA
GAGTGTGTGTAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
155-279, gnl|bosTau2|chr10 (28674848-28674724) |
|
155-279, gnl|Hg17|chr14 (49783906-49783787) |
|
155-279, gnl|Mm7|chr12 (67633662-67633543) |
| |
|
490-724, gnl|bosTau2|chr10 (28674736-28674502) |
|
490-724, gnl|canFam2|chr8 (29729917-29730134) |
|
490-724, gnl|danRer3|chr13 (39332358-39332567) |
|
490-724, gnl|dasNov1|scaffold_92237 (1276-1490) |
|
490-724, gnl|echTel1|scaffold_276632 (171-390) |
|
490-724, gnl|fr1|chrUn (2750740-2750526) |
|
490-724, gnl|galGal2|chr5 (54453602-54453820) |
|
490-724, gnl|hg17|chr14 (49783526-49783744) |
|
490-724, gnl|Hg17|chr14 (49783798-49783568) |
|
490-724, gnl|mm7|chr12 (67633293-67633515) |
|
490-724, gnl|Mm7|chr12 (67633555-67633335) |
|
490-724, gnl|monDom2|scaffold_34 (16952646-16952449) |
|
490-724, gnl|oryCun1|scaffold_153588 (3557-3776) |
|
490-724, gnl|panTro1|chr15 (49196454-49196672) |
|
490-724, gnl|rheMac2|chr7 (113307755-113307973) |
|
490-724, gnl|rn3|chr6 (91735910-91736131) |
|
490-724, gnl|tetNig1|chr10 (11310943-11310748) |
|
490-724, gnl|xenTro1|scaffold_1266 (214252-214041) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
155-279, gnl|bosTau2|chr10 (28674848-28674724) |
|
155-279, gnl|Hg17|chr14 (49783906-49783787) |
|
155-279, gnl|Mm7|chr12 (67633662-67633543) |
| |
|
490-724, gnl|bosTau2|chr10 (28674736-28674502) |
|
490-724, gnl|canFam2|chr8 (29729917-29730134) |
|
490-724, gnl|danRer3|chr13 (39332358-39332567) |
|
490-724, gnl|dasNov1|scaffold_92237 (1276-1490) |
|
490-724, gnl|echTel1|scaffold_276632 (171-390) |
|
490-724, gnl|fr1|chrUn (2750740-2750526) |
|
490-724, gnl|galGal2|chr5 (54453602-54453820) |
|
490-724, gnl|hg17|chr14 (49783526-49783744) |
|
490-724, gnl|Hg17|chr14 (49783798-49783568) |
|
490-724, gnl|mm7|chr12 (67633293-67633515) |
|
490-724, gnl|Mm7|chr12 (67633555-67633335) |
|
490-724, gnl|monDom2|scaffold_34 (16952646-16952449) |
|
490-724, gnl|oryCun1|scaffold_153588 (3557-3776) |
|
490-724, gnl|panTro1|chr15 (49196454-49196672) |
|
490-724, gnl|rheMac2|chr7 (113307755-113307973) |
|
490-724, gnl|rn3|chr6 (91735910-91736131) |
|
490-724, gnl|tetNig1|chr10 (11310943-11310748) |
|
490-724, gnl|xenTro1|scaffold_1266 (214252-214041) |
|
che (0.272628) |
|
eye (0.170503) |
|
ctl (0.153069) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
nca (0.136874) |
|
ute (0.132784) |
|
jca (0.11396) |
|
che (0.272628) |
|
eye (0.170503) |
|
ctl (0.153069) |
|
isp (0.150376) |
|
bfe (0.149858) |
|
nca (0.136874) |
|
ute (0.132784) |
|
jca (0.11396) |
