Non-Coding RNA Search

Ss1.1-rnca17b_n10.5

Sequence:


               
               CCATTTGAAGAGAGAATTTTAGCTGTTCTTAAGTGGCTGCAGCTTCCTAAAGATGAAAGA
CCACACTTTTACACTCTGTATTTAGAAGAACCAGATTCTTCGGGTCATTCATACGGACCA
GTCAGCAGTGAAGTCATCAGAGCTCTGCAGAGGGTTGATGACATGGTTGGCATGCTGATG
GACGGTCTTAAGGAGCTAAACTTGCATCGATGCCTGAACCTCATCCTTATTTCAGATCAT
GGCATGGAACAAGGCAGTTGTAAGAAATATGTGTATCTGAATAAATACTTGGGAGATATT
AAAAATGTTAAAGTTGTCTATGGACCTGCAGCTCGATTGAGACCCTCTGATGTTCCAGAT
AAATACTATTCATTTAATTATGAAGGCATTGCCAAGAATCTTTCTTGCCAGGAACCAAAC
CAGCACTTCAAACCTTACCTGAAGCATTTCTTACCTAAGCGTTTGCACTTTGCCAAAAGT
GACAGGATTGAGCCCTTGACATTCTATTTGGACCCTCAGTGGCAACTTGCACTGAATCCT
TCAGAAAGGAAATATTGTGGAGGGGGATTTCATGGCTCTGACAATGCATTTTCAAATATG
CAAGCCCTCTTTATTGGCTATGGACCTGGATTCAAGCACAGCATTGAAGTTGACCCCTTT
GAAAATATTGAAGTCTATAACTTAATGTGTGATTTACTGAATTTGACACCAGCTCCTAAT
AATGGAACTCATGGAAGTCTTAACCACCTTCTGAAGAATCCTGTTTACACCCCAAAGCAC
CCCAAAGAAGTCCGCTCCCTGGTCCAGTGCCCCTTCACAAGAGCCCCCCAGGAGAACCTC
GATGGCTCCTGTGACCCTTCAATTTGGCCAATGGTGGATTTTCAGACACAGTTGAATCTG
ACCATGGCAGAAGAATTAAATAAAGGTTCAAGTCAAGTATATTCTGAAGCATTACTCACC
ACTAATATGGTACCCATGTACCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATTTGAAGAGAGAATTTTAGCTGTTCTTAAGTGGCTGCAGCTTCCTAAAGATGAAAGA
CCACACTTTTACACTCTGTATTTAGAAGAACCAGATTCTTCGGGTCATTCATACGGACCA
GTCAGCAGTGAAGTCATCAGAGCTCTGCAGAGGGTTGATGACATGGTTGGCATGCTGATG
GACGGTCTTAAGGAGCTAAACTTGCATCGATGCCTGAACCTCATCCTTATTTCAGATCAT
GGCATGGAACAAGGCAGTTGTAAGAAATATGTGTATCTGAATAAATACTTGGGAGATATT
AAAAATGTTAAAGTTGTCTATGGACCTGCAGCTCGATTGAGACCCTCTGATGTTCCAGAT
AAATACTATTCATTTAATTATGAAGGCATTGCCAAGAATCTTTCTTGCCAGGAACCAAAC
CAGCACTTCAAACCTTACCTGAAGCATTTCTTACCTAAGCGTTTGCACTTTGCCAAAAGT
GACAGGATTGAGCCCTTGACATTCTATTTGGACCCTCAGTGGCAACTTGCACTGAATCCT
TCAGAAAGGAAATATTGTGGAGGGGGATTTCATGGCTCTGACAATGCATTTTCAAATATG
CAAGCCCTCTTTATTGGCTATGGACCTGGATTCAAGCACAGCATTGAAGTTGACCCCTTT
GAAAATATTGAAGTCTATAACTTAATGTGTGATTTACTGAATTTGACACCAGCTCCTAAT
AATGGAACTCATGGAAGTCTTAACCACCTTCTGAAGAATCCTGTTTACACCCCAAAGCAC
CCCAAAGAAGTCCGCTCCCTGGTCCAGTGCCCCTTCACAAGAGCCCCCCAGGAGAACCTC
GATGGCTCCTGTGACCCTTCAATTTGGCCAATGGTGGATTTTCAGACACAGTTGAATCTG
ACCATGGCAGAAGAATTAAATAAAGGTTCAAGTCAAGTATATTCTGAAGCATTACTCACC
ACTAATATGGTACCCATGTACCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56203678|emb|CAI19515.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56203678|emb|CAI19515.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               241-359, - strand, RNAz p=0.523302

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               241-359, - strand, RNAz p=0.523302

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               241-381, gnl|bosTau2|chr1 (43119892-43119752)
               

               
               241-381, gnl|canFam2|chr1 (3273326-3273166)
               

               
               241-381, gnl|danRer3|chr20 (16735538-16735368)
               

               
               241-381, gnl|echTel1|scaffold_317026 (66718-66877)
               

               
               241-381, gnl|galGal2|chrUn (9713100-9713262)
               

               
               241-381, gnl|hg17|chr6 (132232170-132232332)
               

               
               241-381, gnl|Hg17|chr6 (132232190-132232330)
               

               
               241-381, gnl|loxAfr1|scaffold_39065 (11757-11600)
               

               
               241-381, gnl|mm7|chr10 (24411226-24411069)
               

               
               241-381, gnl|Mm7|chr10 (24411209-24411069)
               

               
               241-381, gnl|monDom2|scaffold_0 (79981594-79981431)
               

               
               241-381, gnl|oryCun1|scaffold_132091 (2953-2789)
               

               
               241-381, gnl|panTro1|chr5 (134879401-134879565)
               

               
               241-381, gnl|rheMac2|chr4 (132019815-132019652)
               

               
               241-381, gnl|rn3|chr1 (21270905-21271064)
               


               
               406-534, gnl|bosTau2|chr1 (43117487-43117359)
               

               
               406-534, gnl|Hg17|chr6 (132235756-132235884)
               

               
               406-534, gnl|Mm7|chr10 (24408159-24408031)
               


               
               691-861, gnl|bosTau2|chr1 (43113145-43112975)
               

               
               691-861, gnl|Hg17|chr6 (132239824-132239994)
               

               
               691-861, gnl|Mm7|chr10 (24404997-24404830)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               241-381, gnl|bosTau2|chr1 (43119892-43119752)
               

               
               241-381, gnl|canFam2|chr1 (3273326-3273166)
               

               
               241-381, gnl|danRer3|chr20 (16735538-16735368)
               

               
               241-381, gnl|echTel1|scaffold_317026 (66718-66877)
               

               
               241-381, gnl|galGal2|chrUn (9713100-9713262)
               

               
               241-381, gnl|hg17|chr6 (132232170-132232332)
               

               
               241-381, gnl|Hg17|chr6 (132232190-132232330)
               

               
               241-381, gnl|loxAfr1|scaffold_39065 (11757-11600)
               

               
               241-381, gnl|mm7|chr10 (24411226-24411069)
               

               
               241-381, gnl|Mm7|chr10 (24411209-24411069)
               

               
               241-381, gnl|monDom2|scaffold_0 (79981594-79981431)
               

               
               241-381, gnl|oryCun1|scaffold_132091 (2953-2789)
               

               
               241-381, gnl|panTro1|chr5 (134879401-134879565)
               

               
               241-381, gnl|rheMac2|chr4 (132019815-132019652)
               

               
               241-381, gnl|rn3|chr1 (21270905-21271064)
               


               
               406-534, gnl|bosTau2|chr1 (43117487-43117359)
               

               
               406-534, gnl|Hg17|chr6 (132235756-132235884)
               

               
               406-534, gnl|Mm7|chr10 (24408159-24408031)
               


               
               691-861, gnl|bosTau2|chr1 (43113145-43112975)
               

               
               691-861, gnl|Hg17|chr6 (132239824-132239994)
               

               
               691-861, gnl|Mm7|chr10 (24404997-24404830)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nca (0.273748)
               

               
               fty (0.17584)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)
               

               
               fty (0.17584)
               

               
               bla (0.124347)

	241-381, gnl\|bosTau2\|chr1 (43119892-43119752)
	241-381, gnl\|canFam2\|chr1 (3273326-3273166)
	241-381, gnl\|danRer3\|chr20 (16735538-16735368)
	241-381, gnl\|echTel1\|scaffold_317026 (66718-66877)
	241-381, gnl\|galGal2\|chrUn (9713100-9713262)
	241-381, gnl\|hg17\|chr6 (132232170-132232332)
	241-381, gnl\|Hg17\|chr6 (132232190-132232330)
	241-381, gnl\|loxAfr1\|scaffold_39065 (11757-11600)
	241-381, gnl\|mm7\|chr10 (24411226-24411069)
	241-381, gnl\|Mm7\|chr10 (24411209-24411069)
	241-381, gnl\|monDom2\|scaffold_0 (79981594-79981431)
	241-381, gnl\|oryCun1\|scaffold_132091 (2953-2789)
	241-381, gnl\|panTro1\|chr5 (134879401-134879565)
	241-381, gnl\|rheMac2\|chr4 (132019815-132019652)
	241-381, gnl\|rn3\|chr1 (21270905-21271064)

	406-534, gnl\|bosTau2\|chr1 (43117487-43117359)
	406-534, gnl\|Hg17\|chr6 (132235756-132235884)
	406-534, gnl\|Mm7\|chr10 (24408159-24408031)

	691-861, gnl\|bosTau2\|chr1 (43113145-43112975)
	691-861, gnl\|Hg17\|chr6 (132239824-132239994)
	691-861, gnl\|Mm7\|chr10 (24404997-24404830)