Non-Coding RNA Search

Ss1.1-rnca17b_n14.5

Sequence:


               
               TGTGGTGAGAGGCCCAAGGCGTTGGGGTGACCACGGGGCCATCTGCTGCAGAGGCAGCCA
CATCTTCATGTCTGCCTGGGTCACCTAGTGTCTGCCCAAGGCAGGCCCTCGGCCTGTGAA
GCCTCCACAGTGACCGTTGAGACCAGCTTGTTTGGGAGAATGCTCAGCGGAGGAGTCCTC
GGAAGCGCCCCCTCCTCCGCCCCGAGGGACCCCGCCCCCAGCGGCACCTAGCGACCCTTC
TCCAGCACTGCCACCACCGCAGCCCAGCCCGCCGCCGCCTCGCGAGGACCCAGGAAGGCC
GCACACGGGCCAGCGGCCGGTCCTGCCCCGGAGACCCACCCAGCCGCCGCCCTCGAGGGC
GTGGCCCGGCTGGATGGGGCTGCCCTTCCTGCCCGGCTCCACCGGAGTCATCACGGAGAC
CGGGGAGGCCGGGCCTCCGGGCAGGGTGGGCGTGTCGGGGAGGGGGCTGCCCCAGGGCGC
CGACGGCCACACCCAGCCCGGGCTCGTCCCCAGCGCTGAAGGCTATGCCGGAGCTCCAGG
GTACCCCAAGTCACCACCTGTAGCCTCCCCAGGGGTTCCGGTCCCGTCTCTGGTGTCCTT
CTCGGCGGGGCTCACCCAGAAGCCTTTCCCCAGTGATGGGGGCGTCGTCCTCTTTAACAA
AGTGCTGGTGAACGACGGGGACGTGTATGACCCCAGCACTGGGGTCTTCACTGCTCCATA
TGAAGGGCGCTACCTGATCACAGCCACCCTCACCCCCGAGCGGGATGCGTACGTGGAAGC
TGTCCTCTCGGTCTCCAACGCCAGTGTTGCCCAGCTGCACACCGCCGGCTACAGGAGAGA
ATTCCTGGAGTACCACCGGCCCCAGGGGGCTCCGCACACGTGCGGGGGCCCAGGCGCCTT
CCACCTGGTCGTGCACTTGAAGGCAGGGGACGGCGTCAACATCGTGGTGACCGGGGGCAG
GCTGGCGCACACGGACTTTGATGAGATGTACTCAACGTTTAGTGGGGTTTTCTTATATCC
TTTCCTTTCCCACCTCTAGGGTGGCCGGCAAAGAGCTGTCAGAACTCAGCAGCGTTCACC
TATTCAGTTTGTGTGTGTAGCTGCAGCACGGGTCTCGTCTGCTGCAGACTCCCCTGCATC
GGCGTGAGCTCTGCTCCGAGGGGCTGTGCTGGGCCGAAGCGTGCTGACCTCGGAGGCTTG
AGCCACCGCCCTGCAGGGCCACGTCCTGCTGCTGGAGGAGGAGGAGAAGCCACTGGGCTG
TAGGCCTCAGGAGGCAGGAGGCAAAAACTGCCCGTGTCTGTGGCCAGTCTTTTGGAGCAA
GTGTTGCCAGCGGTCTTTGTTCACCCTGCATGCACAAGGGTTTAAACACTGAAGTGGCAG
GTGCCACCACAGACCTGGGGTTGACAGAGGGCTGTCCCAGGTTTGGCTGAACACCCCCCC
CCCCCCGCCATTTACCTGGCTGAGAGGGATGCAGGAGAGACTGTTTACGTAGCTTGTTGG
ACTCCTTGAATGATATATGTACAACGTAAGTGCAAAGACGGGGAGCATGAATAAAGATGT
AAAACCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGGTGAGAGGCCCAAGGCGTTGGGGTGACCACGGGGCCATCTGCTGCAGAGGCAGCCA
CATCTTCATGTCTGCCTGGGTCACCTAGTGTCTGCCCAAGGCAGGCCCTCGGCCTGTGAA
GCCTCCACAGTGACCGTTGAGACCAGCTTGTTTGGGAGAATGCTCAGCGGAGGAGTCCTC
GGAAGCGCCCCCTCCTCCGCCCCGAGGGACCCCGCCCCCAGCGGCACCTAGCGACCCTTC
TCCAGCACTGCCACCACCGCAGCCCAGCCCGCCGCCGCCTCGCGAGGACCCAGGAAGGCC
GCACACGGGCCAGCGGCCGGTCCTGCCCCGGAGACCCACCCAGCCGCCGCCCTCGAGGGC
GTGGCCCGGCTGGATGGGGCTGCCCTTCCTGCCCGGCTCCACCGGAGTCATCACGGAGAC
CGGGGAGGCCGGGCCTCCGGGCAGGGTGGGCGTGTCGGGGAGGGGGCTGCCCCAGGGCGC
CGACGGCCACACCCAGCCCGGGCTCGTCCCCAGCGCTGAAGGCTATGCCGGAGCTCCAGG
GTACCCCAAGTCACCACCTGTAGCCTCCCCAGGGGTTCCGGTCCCGTCTCTGGTGTCCTT
CTCGGCGGGGCTCACCCAGAAGCCTTTCCCCAGTGATGGGGGCGTCGTCCTCTTTAACAA
AGTGCTGGTGAACGACGGGGACGTGTATGACCCCAGCACTGGGGTCTTCACTGCTCCATA
TGAAGGGCGCTACCTGATCACAGCCACCCTCACCCCCGAGCGGGATGCGTACGTGGAAGC
TGTCCTCTCGGTCTCCAACGCCAGTGTTGCCCAGCTGCACACCGCCGGCTACAGGAGAGA
ATTCCTGGAGTACCACCGGCCCCAGGGGGCTCCGCACACGTGCGGGGGCCCAGGCGCCTT
CCACCTGGTCGTGCACTTGAAGGCAGGGGACGGCGTCAACATCGTGGTGACCGGGGGCAG
GCTGGCGCACACGGACTTTGATGAGATGTACTCAACGTTTAGTGGGGTTTTCTTATATCC
TTTCCTTTCCCACCTCTAGGGTGGCCGGCAAAGAGCTGTCAGAACTCAGCAGCGTTCACC
TATTCAGTTTGTGTGTGTAGCTGCAGCACGGGTCTCGTCTGCTGCAGACTCCCCTGCATC
GGCGTGAGCTCTGCTCCGAGGGGCTGTGCTGGGCCGAAGCGTGCTGACCTCGGAGGCTTG
AGCCACCGCCCTGCAGGGCCACGTCCTGCTGCTGGAGGAGGAGGAGAAGCCACTGGGCTG
TAGGCCTCAGGAGGCAGGAGGCAAAAACTGCCCGTGTCTGTGGCCAGTCTTTTGGAGCAA
GTGTTGCCAGCGGTCTTTGTTCACCCTGCATGCACAAGGGTTTAAACACTGAAGTGGCAG
GTGCCACCACAGACCTGGGGTTGACAGAGGGCTGTCCCAGGTTTGGCTGAACACCCCCCC
CCCCCCGCCATTTACCTGGCTGAGAGGGATGCAGGAGAGACTGTTTACGTAGCTTGTTGG
ACTCCTTGAATGATATATGTACAACGTAAGTGCAAAGACGGGGAGCATGAATAAAGATGT
AAAACCAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|14517602|dbj|BAB61020.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14517602|dbj|BAB61020.1|

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               159-540, gnl|bosTau2|chr24 (27032058-27031671)
               

               
               159-540, gnl|Hg17|chr18 (2896769-2897084)
               

               
               159-540, gnl|Mm7|chr17 (69536057-69535686)
               


               
               697-1134, gnl|bosTau2|chr24 (27029084-27028642)
               

               
               697-1134, gnl|Hg17|chr18 (2903060-2903515)
               

               
               697-1134, gnl|Mm7|chr17 (69532460-69532021)
               


               
               1181-1565, gnl|bosTau2|chr24 (27028475-27028075)
               

               
               1181-1565, gnl|Hg17|chr18 (2903696-2904063)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               159-540, gnl|bosTau2|chr24 (27032058-27031671)
               

               
               159-540, gnl|Hg17|chr18 (2896769-2897084)
               

               
               159-540, gnl|Mm7|chr17 (69536057-69535686)
               


               
               697-1134, gnl|bosTau2|chr24 (27029084-27028642)
               

               
               697-1134, gnl|Hg17|chr18 (2903060-2903515)
               

               
               697-1134, gnl|Mm7|chr17 (69532460-69532021)
               


               
               1181-1565, gnl|bosTau2|chr24 (27028475-27028075)
               

               
               1181-1565, gnl|Hg17|chr18 (2903696-2904063)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               elu (0.385356)
               

               
               hlv (0.278513)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               hlv (0.278513)
               

               
               ese (0.253004)
               

               
               cly (0.241284)
               

               
               mas (0.210305)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	159-540, gnl\|bosTau2\|chr24 (27032058-27031671)
	159-540, gnl\|Hg17\|chr18 (2896769-2897084)
	159-540, gnl\|Mm7\|chr17 (69536057-69535686)

	697-1134, gnl\|bosTau2\|chr24 (27029084-27028642)
	697-1134, gnl\|Hg17\|chr18 (2903060-2903515)
	697-1134, gnl\|Mm7\|chr17 (69532460-69532021)

	1181-1565, gnl\|bosTau2\|chr24 (27028475-27028075)
	1181-1565, gnl\|Hg17\|chr18 (2903696-2904063)

	elu (0.385356)
	hlv (0.278513)
	ese (0.253004)
	cly (0.241284)
	mas (0.210305)
	col (0.195008)
	fbs (0.175346)
	nje (0.16592)
	nca (0.136874)
	pla (0.133672)
	cov (0.132153)
	med (0.116252)
	eje (0.0988338)