Non-Coding RNA Search

Ss1.1-rnca18b_j21.5

Sequence:


               
               TATTAATCCTGTAGATGCAATATATCAACCTAGTCCCTTGGAACCTGTGATCAGCACAAT
GCCTTCCCAGACTGTCTTACCTCCAGAACCTGCTCAGTTATGTAAATCAGAGCAGCGTCC
ATCTTCCCTACCAGTTGGACCTGTGTTAGCTACCTTGGGACATCATCAGACTCCAACACC
AAATAGTACAGGCAGTGGACACTCACCACCTAGTAGCAGTCTAACTTCTCCAAGCCATGT
CAACTTGTCTCCAAACACAGTTCCAGAGTTCTCTTATTCTAGCAGTGAGGATGAATTCTA
TGACGCTGATGAATTCCATCAAAGTGGCTCATCCCCAAAGCACTTAATAGATTCCTCTGG
ATCTGCCTCAGTCTTAACACACAGCAGCTCAGGAAATAGTCTAAAGCGCCCAGATACCAC
AGAATCACTTAACTCTTCCATGTCCAATGGGACAAGTGATGCCGACCTTTTTGATTCACA
TGACGATAGAGATGATGAAGGAGAGGCAGGGTCGGTGGAAGAGCACAAGAGCGTTATCAT
GCATCTGTTGTCACAGGTTAGGCTTGGAATGGATCTTACTAAGGTAGTTCTTCCAACGTT
TATTCTTGAAAGAAGATCTCTTTTAGAAATGTATGCAGACTTTTTTGCACATCCGGACCT
GTTTGTGAGTATTAGTGACCAGAAGGATGCCAGGGACCGAATGGTTCAGGTTGTGAAATG
GTACCTCTCAGCCTTTCACGCAGGAAGAAAAGGATCAGTTGCCAAGAAGCCCTACAACCC
CATTTTGGGTGAGATCTTTCAGTGTCACTGGACACTGCCAAATGATACGGAAGAGAATGC
GGAGCTCGTTTCAGAAGGACCAGTTCCCTGGGTTTCCAAGAATAGCGTAACCTTCGTGGC
CGAGCAGGTCTCCCATCATCCACCCATTTCAGCCTTTTATGCTGAGTGTTATAACAAGAA
GATACAATTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTAATCCTGTAGATGCAATATATCAACCTAGTCCCTTGGAACCTGTGATCAGCACAAT
GCCTTCCCAGACTGTCTTACCTCCAGAACCTGCTCAGTTATGTAAATCAGAGCAGCGTCC
ATCTTCCCTACCAGTTGGACCTGTGTTAGCTACCTTGGGACATCATCAGACTCCAACACC
AAATAGTACAGGCAGTGGACACTCACCACCTAGTAGCAGTCTAACTTCTCCAAGCCATGT
CAACTTGTCTCCAAACACAGTTCCAGAGTTCTCTTATTCTAGCAGTGAGGATGAATTCTA
TGACGCTGATGAATTCCATCAAAGTGGCTCATCCCCAAAGCACTTAATAGATTCCTCTGG
ATCTGCCTCAGTCTTAACACACAGCAGCTCAGGAAATAGTCTAAAGCGCCCAGATACCAC
AGAATCACTTAACTCTTCCATGTCCAATGGGACAAGTGATGCCGACCTTTTTGATTCACA
TGACGATAGAGATGATGAAGGAGAGGCAGGGTCGGTGGAAGAGCACAAGAGCGTTATCAT
GCATCTGTTGTCACAGGTTAGGCTTGGAATGGATCTTACTAAGGTAGTTCTTCCAACGTT
TATTCTTGAAAGAAGATCTCTTTTAGAAATGTATGCAGACTTTTTTGCACATCCGGACCT
GTTTGTGAGTATTAGTGACCAGAAGGATGCCAGGGACCGAATGGTTCAGGTTGTGAAATG
GTACCTCTCAGCCTTTCACGCAGGAAGAAAAGGATCAGTTGCCAAGAAGCCCTACAACCC
CATTTTGGGTGAGATCTTTCAGTGTCACTGGACACTGCCAAATGATACGGAAGAGAATGC
GGAGCTCGTTTCAGAAGGACCAGTTCCCTGGGTTTCCAAGAATAGCGTAACCTTCGTGGC
CGAGCAGGTCTCCCATCATCCACCCATTTCAGCCTTTTATGCTGAGTGTTATAACAAGAA
GATACAATTCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27597100|ref|NP_775485.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27597100|ref|NP_775485.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               149-367, - strand, RNAz p=0.997283

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               149-367, - strand, RNAz p=0.997283

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               31-970, gnl|bosTau2|chr21 (28560418-28561358)
               

               
               31-970, gnl|Hg17|chr12 (65249013-65248084)
               

               
               31-970, gnl|Mm7|chr4 (108463899-108442634)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-970, gnl|bosTau2|chr21 (28560418-28561358)
               

               
               31-970, gnl|Hg17|chr12 (65249013-65248084)
               

               
               31-970, gnl|Mm7|chr4 (108463899-108442634)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cki (0.165235)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	31-970, gnl\|bosTau2\|chr21 (28560418-28561358)
	31-970, gnl\|Hg17\|chr12 (65249013-65248084)
	31-970, gnl\|Mm7\|chr4 (108463899-108442634)

	cki (0.165235)
	pty (0.142714)
	nca (0.136874)
	jca (0.11396)
	cty (0.10408)