Non-Coding RNA Search

Ss1.1-rnca18b_j24.5

Sequence:


               
               TGTAACTAGGAAAAGCAAACGTTAAATTGTAAACTTTAATATTTCCTTGTTCGGAGCAAT
GACTGTGATAGCAGAATGGGCTTTTGAGACCTGCATGTCCCAGTGTACAATTTCAGCCCA
GCATTTTCTGCATCCTCGTGTGGCCGTCCACAGGATTCTGTGGCAGAAGTGACTGATGTG
CTGTTTTTCTATCTAGTGATGCAGCTGCTTTGGGCCCCTGGCCATTGTTCTAAAGCTCTC
AGTCCTGACAGCACAAGAGACACTAGGTCACCAGTGTTGAGAGACCCCAGGGGAGGCCCC
GGTGGCCTTGTTTCTTGCCTTCACAATGGTCATTCAGTGACTACCTGTGCCCCTTTCAGT
GGCAACTCTGGTCTAAGGGAACATTCAGCCGTCTAGCGGCCTCTGCTCGGACGTTCCCTG
CTCCGAGTAATCTCAGCCCATTCCTCTCTCCATCCCTGAAAGAAAAGGGACGGCTGGCCC
TCTCTTCTCCCCCACCTGCATCACCAGGCTTTTACGCTACAGCATCAGTCATGATTGTGG
TTTAACCGTGGGATTTTTTTTTCTGGTGACATTTCTGCCAGGGAAATGGGAAGATTTCCG
AGTGCTTTGTGACGATCTCAATTGTCTGTCTCTTTCTCTGACTTGTATGAAGGAGATTGT
ACATTGCCTGATAGCTCTTTGTAAATGAGAACTAGCGCTAACATCCAAGCATTCTGAAGT
CTTGCTTGTCCTTCTGAGTTTAGGTTTTATTTTTGTTTTACATTTTGTTTGGGGACTTGG
GGCAAGCTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTAACTAGGAAAAGCAAACGTTAAATTGTAAACTTTAATATTTCCTTGTTCGGAGCAAT
GACTGTGATAGCAGAATGGGCTTTTGAGACCTGCATGTCCCAGTGTACAATTTCAGCCCA
GCATTTTCTGCATCCTCGTGTGGCCGTCCACAGGATTCTGTGGCAGAAGTGACTGATGTG
CTGTTTTTCTATCTAGTGATGCAGCTGCTTTGGGCCCCTGGCCATTGTTCTAAAGCTCTC
AGTCCTGACAGCACAAGAGACACTAGGTCACCAGTGTTGAGAGACCCCAGGGGAGGCCCC
GGTGGCCTTGTTTCTTGCCTTCACAATGGTCATTCAGTGACTACCTGTGCCCCTTTCAGT
GGCAACTCTGGTCTAAGGGAACATTCAGCCGTCTAGCGGCCTCTGCTCGGACGTTCCCTG
CTCCGAGTAATCTCAGCCCATTCCTCTCTCCATCCCTGAAAGAAAAGGGACGGCTGGCCC
TCTCTTCTCCCCCACCTGCATCACCAGGCTTTTACGCTACAGCATCAGTCATGATTGTGG
TTTAACCGTGGGATTTTTTTTTCTGGTGACATTTCTGCCAGGGAAATGGGAAGATTTCCG
AGTGCTTTGTGACGATCTCAATTGTCTGTCTCTTTCTCTGACTTGTATGAAGGAGATTGT
ACATTGCCTGATAGCTCTTTGTAAATGAGAACTAGCGCTAACATCCAAGCATTCTGAAGT
CTTGCTTGTCCTTCTGAGTTTAGGTTTTATTTTTGTTTTACATTTTGTTTGGGGACTTGG
GGCAAGCTATTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               110-226, + strand, RNAz p=0.772746

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-226, + strand, RNAz p=0.772746

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-792, gnl|bosTau2|chr10 (58582961-58583758)
               

               
               1-792, gnl|Hg17|chr14 (71276628-71277421)
               

               
               1-792, gnl|Mm7|chr12 (80443582-80444332)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr10 (58582961-58583758)
               

               
               1-792, gnl|Hg17|chr14 (71276628-71277421)
               

               
               1-792, gnl|Mm7|chr12 (80443582-80444332)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pgl (0.236967)
               

               
               nca (0.136874)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               nca (0.136874)

	1-792, gnl\|bosTau2\|chr10 (58582961-58583758)
	1-792, gnl\|Hg17\|chr14 (71276628-71277421)
	1-792, gnl\|Mm7\|chr12 (80443582-80444332)