Non-Coding RNA Search

Ss1.1-rnca18b_n4.5

Sequence:


               
               CTGGAGCCCAACACCACCATCCAACTCTCCTAGGCTGTGCCAAGACCCAGGACACAGGAC
GGCCCCCCGGCACCCGGAAGGGGGTTGTCCTGCTCACTCACCCGGATCCGGCTCGCACCC
CTGCCCCCTGGGGTCCCGTCCCAGGAGGAAGGGTTCCACTCCTCCCCAGCCCATCTTTGC
CCCGGATCTCACCTGGGGCCTCTCCTCTCTCCCCGCCCACATTTGGACTATTCCCTTGGG
CCAACCACTCTGCTCTCACCCTTCGCTCCCACAGCCATCCGTCCTCAGATAAACCACTCT
CTGGGTTCCCCCCTCCCTTCTCATAATGACCAACAGGACCACTGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAGCCCAACACCACCATCCAACTCTCCTAGGCTGTGCCAAGACCCAGGACACAGGAC
GGCCCCCCGGCACCCGGAAGGGGGTTGTCCTGCTCACTCACCCGGATCCGGCTCGCACCC
CTGCCCCCTGGGGTCCCGTCCCAGGAGGAAGGGTTCCACTCCTCCCCAGCCCATCTTTGC
CCCGGATCTCACCTGGGGCCTCTCCTCTCTCCCCGCCCACATTTGGACTATTCCCTTGGG
CCAACCACTCTGCTCTCACCCTTCGCTCCCACAGCCATCCGTCCTCAGATAAACCACTCT
CTGGGTTCCCCCCTCCCTTCTCATAATGACCAACAGGACCACTGCTCC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-228, - strand, RNAz p=0.998381
               

               
               43-233, - strand, RNAz p=0.981977

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-228, - strand, RNAz p=0.998381
               

               
               43-233, - strand, RNAz p=0.981977

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-345, gnl|bosTau2|chr15 (48123571-48123923)
               

               
               1-345, gnl|canFam2|chr18 (46173410-46173017)
               

               
               1-345, gnl|dasNov1|scaffold_84329 (5784-6193)
               

               
               1-345, gnl|hg17|chr11 (46298668-46299086)
               

               
               1-345, gnl|Hg17|chr11 (46298840-46299155)
               

               
               1-345, gnl|loxAfr1|scaffold_79767 (831-353)
               

               
               1-345, gnl|mm7|chr2 (91833871-91833492)
               

               
               1-345, gnl|Mm7|chr2 (91833719-91833422)
               

               
               1-345, gnl|monDom2|scaffold_33 (12342174-12342594)
               

               
               1-345, gnl|panTro1|chr9 (46807049-46807468)
               

               
               1-345, gnl|rheMac2|chr14 (25810161-25809744)
               

               
               1-345, gnl|rn3|chr3 (76258395-76257963)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-345, gnl|bosTau2|chr15 (48123571-48123923)
               

               
               1-345, gnl|canFam2|chr18 (46173410-46173017)
               

               
               1-345, gnl|dasNov1|scaffold_84329 (5784-6193)
               

               
               1-345, gnl|hg17|chr11 (46298668-46299086)
               

               
               1-345, gnl|Hg17|chr11 (46298840-46299155)
               

               
               1-345, gnl|loxAfr1|scaffold_79767 (831-353)
               

               
               1-345, gnl|mm7|chr2 (91833871-91833492)
               

               
               1-345, gnl|Mm7|chr2 (91833719-91833422)
               

               
               1-345, gnl|monDom2|scaffold_33 (12342174-12342594)
               

               
               1-345, gnl|panTro1|chr9 (46807049-46807468)
               

               
               1-345, gnl|rheMac2|chr14 (25810161-25809744)
               

               
               1-345, gnl|rn3|chr3 (76258395-76257963)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nca (0.136874)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               eje (0.0988338)

	1-228, - strand, RNAz p=0.998381
	43-233, - strand, RNAz p=0.981977

	1-345, gnl\|bosTau2\|chr15 (48123571-48123923)
	1-345, gnl\|canFam2\|chr18 (46173410-46173017)
	1-345, gnl\|dasNov1\|scaffold_84329 (5784-6193)
	1-345, gnl\|hg17\|chr11 (46298668-46299086)
	1-345, gnl\|Hg17\|chr11 (46298840-46299155)
	1-345, gnl\|loxAfr1\|scaffold_79767 (831-353)
	1-345, gnl\|mm7\|chr2 (91833871-91833492)
	1-345, gnl\|Mm7\|chr2 (91833719-91833422)
	1-345, gnl\|monDom2\|scaffold_33 (12342174-12342594)
	1-345, gnl\|panTro1\|chr9 (46807049-46807468)
	1-345, gnl\|rheMac2\|chr14 (25810161-25809744)
	1-345, gnl\|rn3\|chr3 (76258395-76257963)