Non-Coding RNA Search

Ss1.1-rnca19b_a13.5

Sequence:


               
               TGTTCAAACCACTGCAGCCGCGGAGGCTTCTCGGCCGGATCCCGCTGGTGAGCCCCACGC
CCTCCCGCAGCCACCGACACCGGGCTCCGGAACTCCGCCTCGAGCGCCGGGGCCGCCTTC
TTGGGCGACGTGGACGGCTGCGCCTTGATGACCTGCTGGATGGCCGCGTTCACCGCATCC
TTGTCCACACTGTCCACGCCCAGCCCTTTCTCCAAGTTCTTCTCATTCAGGATCGCCACC
TTTCGGCTCACCGCCCGCTTCTCCAGCTCCACGTGCCGCCGGGACTTGAGGTGGTTTTCG
TAGGCCTTGAAGGAGGCAAACTTCTTACTGCACACCGTGCAGTAGGTGGCCGCGCCCTTG
CTCTCGGGCTCCGCCAGGGCCCGCTGCGCCCGCACCCGCTCCTGGAAGCCCTCGGCGCTG
ACCGGGGCCATGCCGGCCACTTTGCGCCTCAGGTTGTAGCGGTGCCAGTCCGTCTTGTAG
TGCGCCCGCTGCGCCTCCGCGTCGACCAGCACCACCCGGCAGGTGTTGCAGGTGTAGGTC
GCCATCGCTGGCCGGAAAATAACAGGCGACCGCGGCAGAAGCTAGCGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTCAAACCACTGCAGCCGCGGAGGCTTCTCGGCCGGATCCCGCTGGTGAGCCCCACGC
CCTCCCGCAGCCACCGACACCGGGCTCCGGAACTCCGCCTCGAGCGCCGGGGCCGCCTTC
TTGGGCGACGTGGACGGCTGCGCCTTGATGACCTGCTGGATGGCCGCGTTCACCGCATCC
TTGTCCACACTGTCCACGCCCAGCCCTTTCTCCAAGTTCTTCTCATTCAGGATCGCCACC
TTTCGGCTCACCGCCCGCTTCTCCAGCTCCACGTGCCGCCGGGACTTGAGGTGGTTTTCG
TAGGCCTTGAAGGAGGCAAACTTCTTACTGCACACCGTGCAGTAGGTGGCCGCGCCCTTG
CTCTCGGGCTCCGCCAGGGCCCGCTGCGCCCGCACCCGCTCCTGGAAGCCCTCGGCGCTG
ACCGGGGCCATGCCGGCCACTTTGCGCCTCAGGTTGTAGCGGTGCCAGTCCGTCTTGTAG
TGCGCCCGCTGCGCCTCCGCGTCGACCAGCACCACCCGGCAGGTGTTGCAGGTGTAGGTC
GCCATCGCTGGCCGGAAAATAACAGGCGACCGCGGCAGAAGCTAGCGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61832883|ref|XP_614569.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61832883|ref|XP_614569.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-240, - strand, RNAz p=0.505892

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-240, - strand, RNAz p=0.505892

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-586, gnl|bosTau2|chr20 (32700079-32699500)
               

               
               2-586, gnl|Hg17|chr5 (16518222-16518816)
               

               
               2-586, gnl|Mm7|chr15 (26088147-26087555)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-586, gnl|bosTau2|chr20 (32700079-32699500)
               

               
               2-586, gnl|Hg17|chr5 (16518222-16518816)
               

               
               2-586, gnl|Mm7|chr15 (26088147-26087555)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.273748)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)

	2-586, gnl\|bosTau2\|chr20 (32700079-32699500)
	2-586, gnl\|Hg17\|chr5 (16518222-16518816)
	2-586, gnl\|Mm7\|chr15 (26088147-26087555)