Non-Coding RNA Search

Ss1.1-rnca19b_k17.5

Sequence:


               
               CTGGACATGCCCAAGATGTCCTGCTGGAATCTGGCTCGTGGCTACCCGAAGGTAGTCACC
CAGATCACAGTGCACAGCGCTGAGGGCCTGGAGAAGAAGTATGCCAATGAAACTGTAAAC
CCATATTTGGTCATCAAGTGCGGGAAGGAAGAGGGGGGTTCTCCCGTCCAAAAGAATACT
GTTCACGCCATTTTTGACACCCAGGCCATATTCTACAGAAGGACCACTGACATTCCTATT
ATAGTGCAGGTCTGGAACAGACGAAAATTCTGCGATCAGTTCTTGGGACAGGTAACTCTG
GATGCCGACCCCAGTGACTGCCGTGATCTGAAGTCCCTGTACCTGCGTAAGAAGGGTGGC
CCGACTGCCAAAGTTAAACAAGGCCACATCAGCTTCAAGGTTATTTCCAGTGATGACCTC
ACCGAGCTCTAAATCTCCAGCTCCAGAGAATTCTGACAGAGCTTTCCCATCTTTTAATTT
TTCTGTCAGATGCTAGATCTTATCTAAGATTCTTAATCTTTTGAAAGAAAGAAATTCACA
GTAATTAACTTTTCCTTTCTTCTGATCAGTTCCCCATACCTCCCGATCCGAGTAGCAGAA
GTAGCTACATAACCTATATACCTCCAGCAGCTGGACAGGGGGAGGTGACAGTCCTATGTG
GAGATCAGACAGATGTTTGGCCAGGACAGATCTCTAGGGCTTCCGGGGGTGAGAGTTAAG
CAGGACAGCAACAATAGCCTGGACACCCTGCCGATGTCTTTGCTGTTTTCAGGTGCCCAA
TATAACTCCCCTGTAGGGCCTGTTGAGGAAGGAGAAGGGGTGCTCGAGGCCAAGCAGGTC
TAGCCTGACATCCCAGCTCCCGCCTGAACGCTTACAGATGTCCCAGCAGCGTTTTACCCA
GCAGCCAGAGCCTGTTTAGACGTCCCCAGCCCTTACCGCCACCACCGCCACCATCACCAG
TCACCGCCTCCGGAGGAACTGGAGTCCTGCCCTCACCCAAGTCACCCCCCCACAGTAGGT
TTTACCTTCATGTTGAGGAAGCTTCCTAGGTGCTTAATCAAGGGCCGGAGCTCGGCGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGACATGCCCAAGATGTCCTGCTGGAATCTGGCTCGTGGCTACCCGAAGGTAGTCACC
CAGATCACAGTGCACAGCGCTGAGGGCCTGGAGAAGAAGTATGCCAATGAAACTGTAAAC
CCATATTTGGTCATCAAGTGCGGGAAGGAAGAGGGGGGTTCTCCCGTCCAAAAGAATACT
GTTCACGCCATTTTTGACACCCAGGCCATATTCTACAGAAGGACCACTGACATTCCTATT
ATAGTGCAGGTCTGGAACAGACGAAAATTCTGCGATCAGTTCTTGGGACAGGTAACTCTG
GATGCCGACCCCAGTGACTGCCGTGATCTGAAGTCCCTGTACCTGCGTAAGAAGGGTGGC
CCGACTGCCAAAGTTAAACAAGGCCACATCAGCTTCAAGGTTATTTCCAGTGATGACCTC
ACCGAGCTCTAAATCTCCAGCTCCAGAGAATTCTGACAGAGCTTTCCCATCTTTTAATTT
TTCTGTCAGATGCTAGATCTTATCTAAGATTCTTAATCTTTTGAAAGAAAGAAATTCACA
GTAATTAACTTTTCCTTTCTTCTGATCAGTTCCCCATACCTCCCGATCCGAGTAGCAGAA
GTAGCTACATAACCTATATACCTCCAGCAGCTGGACAGGGGGAGGTGACAGTCCTATGTG
GAGATCAGACAGATGTTTGGCCAGGACAGATCTCTAGGGCTTCCGGGGGTGAGAGTTAAG
CAGGACAGCAACAATAGCCTGGACACCCTGCCGATGTCTTTGCTGTTTTCAGGTGCCCAA
TATAACTCCCCTGTAGGGCCTGTTGAGGAAGGAGAAGGGGTGCTCGAGGCCAAGCAGGTC
TAGCCTGACATCCCAGCTCCCGCCTGAACGCTTACAGATGTCCCAGCAGCGTTTTACCCA
GCAGCCAGAGCCTGTTTAGACGTCCCCAGCCCTTACCGCCACCACCGCCACCATCACCAG
TCACCGCCTCCGGAGGAACTGGAGTCCTGCCCTCACCCAAGTCACCCCCCCACAGTAGGT
TTTACCTTCATGTTGAGGAAGCTTCCTAGGTGCTTAATCAAGGGCCGGAGCTCGGCGAGG

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               247-1074, gnl|bosTau2|chrX (19406329-19405506)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               247-1074, gnl|bosTau2|chrX (19406329-19405506)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               eru (0.240096)
               

               
               nep (0.183925)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               nep (0.183925)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               ese (0.126502)

	eru (0.240096)
	nep (0.183925)
	nca (0.136874)
	pla (0.133672)
	ute (0.132784)
	ese (0.126502)