Non-Coding RNA Search

Ss1.1-rnca20b_h23.5

Sequence:


               
               AAACTCCAGGTGATGCCAAAAACTGCTGGTCCCTGGACCACACTTTGAGTAGTGTGGTGG
CACAGGCTTACCCTCCCTTGAGGGAAGAGACTTTGGCAGAGGTCACTGCTAATTTCAGAA
ATGTTAAAAGCTCCAATGCCAGAGTGGTTGACTGCTTTAACCAAGCATTGCTCTGTTTCC
TTTCTCCCAGGTGCTGGCCAACCCACAACCTTGTGATGTGGTTTTCAGGCTTCCAGATCA
CTCACCGTTTCCTTACTGAGGGTGTCCGCGGGCAATTCCCTGTTTAACAACATCCCCAAT
TCAGGGGATCCTCAGCATTCATCTAATTTCTGAAAGGCTATCCTAAAAGATGGTATCTGT
TCTTTTGCAGCACAGTGTTTGTGTTTTTCCTGGTTTCTTTTTCCTTTTTTTTAATTTTTA
AATTTTTTTTTTTTTGGCATTTGCACAACATATACAGAAAAAATATTGAATTGTGATGAT
CCTGAATAGTTTTTTAAAAAGGTCTTAGTGTGGTCACACAGGCTTACCGTTTAAAATTTG
TTATTCTCTTTGGGAGTTAATGAGATTCATGATGCAATAAACCTGTTTTTCTTTTTTAAT
AGCATTTCTAGGAATGAAACACTTTATGTTTACAGAATTGAGCTGCAGAAAATGCAGGAC
ATGCCAATTTGAGACATGCAGTCTTCTGAGACAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTCCAGGTGATGCCAAAAACTGCTGGTCCCTGGACCACACTTTGAGTAGTGTGGTGG
CACAGGCTTACCCTCCCTTGAGGGAAGAGACTTTGGCAGAGGTCACTGCTAATTTCAGAA
ATGTTAAAAGCTCCAATGCCAGAGTGGTTGACTGCTTTAACCAAGCATTGCTCTGTTTCC
TTTCTCCCAGGTGCTGGCCAACCCACAACCTTGTGATGTGGTTTTCAGGCTTCCAGATCA
CTCACCGTTTCCTTACTGAGGGTGTCCGCGGGCAATTCCCTGTTTAACAACATCCCCAAT
TCAGGGGATCCTCAGCATTCATCTAATTTCTGAAAGGCTATCCTAAAAGATGGTATCTGT
TCTTTTGCAGCACAGTGTTTGTGTTTTTCCTGGTTTCTTTTTCCTTTTTTTTAATTTTTA
AATTTTTTTTTTTTTGGCATTTGCACAACATATACAGAAAAAATATTGAATTGTGATGAT
CCTGAATAGTTTTTTAAAAAGGTCTTAGTGTGGTCACACAGGCTTACCGTTTAAAATTTG
TTATTCTCTTTGGGAGTTAATGAGATTCATGATGCAATAAACCTGTTTTTCTTTTTTAAT
AGCATTTCTAGGAATGAAACACTTTATGTTTACAGAATTGAGCTGCAGAAAATGCAGGAC
ATGCCAATTTGAGACATGCAGTCTTCTGAGACAGGC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-118, - strand, RNAz p=0.769503
               

               
               584-695, - strand, RNAz p=0.959169

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.769503
               

               
               584-695, - strand, RNAz p=0.959169

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-695, gnl|bosTau2|chr6 (31041996-31042682)
               

               
               1-695, gnl|Hg17|chr4 (41539917-41540580)
               

               
               1-695, gnl|Mm7|chr5 (66409582-66410224)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-695, gnl|bosTau2|chr6 (31041996-31042682)
               

               
               1-695, gnl|Hg17|chr4 (41539917-41540580)
               

               
               1-695, gnl|Mm7|chr5 (66409582-66410224)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               nca (0.136874)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               eye (0.170503)
               

               
               nca (0.136874)

	1-118, - strand, RNAz p=0.769503
	584-695, - strand, RNAz p=0.959169

	1-695, gnl\|bosTau2\|chr6 (31041996-31042682)
	1-695, gnl\|Hg17\|chr4 (41539917-41540580)
	1-695, gnl\|Mm7\|chr5 (66409582-66410224)