Non-Coding RNA Search

Ss1.1-rnca21b_a10.5

Sequence:


               
               CAAGGAAAGAGGCAGCCTGGGCCATCACCAATGCCACATCAGGAGGAACCCCTGAGCAAA
TCAGGTACCTGGTCTCCCTGGGCTGCATCAAACCCCTGTGTGACTTGCTGACTGTAATGG
ACTCAAAAATTGTACAAGTAGCCCTCAATGGCCTGGAGAACATCCTTCGGCTTGGAGAGC
AAGAGGGCAAGCGCAGTGGCTCAGGGGTCAATCCCTACTGCGGCCTCATCGAGGAAGCCT
ATGGCTTGGATAAAATTGAGTTTCTCCAGAGCCATGAGAACCAGGAGATCTATCAGAAGG
CCTTCGACCTCATTGAGCACTACTTTGGTGTAGAAGATGATGATAGCAGCCTGGCTCCCC
AAGTGGATGAAACGCAACAGCAGTTCATCTTCCAGCAGCCTGAGGCCCCCATGGAGGGCT
TCCAGCTATAATGTCTGCCTCCGGGGAGGGGAGGGCGTGGGAAGCACCACCAACCAGCGG
AAAAGCAGCCCTCTGGTGGGCGGGAGACCAGCCCCCCCACCATCAGCCACCACACACCTC
TGCTGCCCTGGAAACTGTGCTCTTGACCCGCTCCGCCCCCTTCCCTGGAGGGAGCACCCT
CTGGACAGACAGAACCATCTGAGGCTCACATTTGGGTTTTGTGACAAGAAGGGGACGTGT
TGGGTTTTTCTTCCTTACACTATATTTTGACTGCACATATGTCTTTAACCCAGGAGCCCA
AGGGTAGACAAAGGAGGACTGAGGTAATCAATTTTGCACCTTTTTTTATTTTTATTTTTT
GTCTTTAGTGGTAACTTCCTTCCCTTTTATCTTTCTTCATCCTTCCCAGTCCTCTGCCCT
GATCTGTATAACTCTTATCTTGGGTACTTGAGCAGATGGAATATTCCAGAGGTGGGGGGT
GGGGGGGAAGGGGAGAAATCCAAAACAAAGTGTTCTTGCTCTGACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGAAAGAGGCAGCCTGGGCCATCACCAATGCCACATCAGGAGGAACCCCTGAGCAAA
TCAGGTACCTGGTCTCCCTGGGCTGCATCAAACCCCTGTGTGACTTGCTGACTGTAATGG
ACTCAAAAATTGTACAAGTAGCCCTCAATGGCCTGGAGAACATCCTTCGGCTTGGAGAGC
AAGAGGGCAAGCGCAGTGGCTCAGGGGTCAATCCCTACTGCGGCCTCATCGAGGAAGCCT
ATGGCTTGGATAAAATTGAGTTTCTCCAGAGCCATGAGAACCAGGAGATCTATCAGAAGG
CCTTCGACCTCATTGAGCACTACTTTGGTGTAGAAGATGATGATAGCAGCCTGGCTCCCC
AAGTGGATGAAACGCAACAGCAGTTCATCTTCCAGCAGCCTGAGGCCCCCATGGAGGGCT
TCCAGCTATAATGTCTGCCTCCGGGGAGGGGAGGGCGTGGGAAGCACCACCAACCAGCGG
AAAAGCAGCCCTCTGGTGGGCGGGAGACCAGCCCCCCCACCATCAGCCACCACACACCTC
TGCTGCCCTGGAAACTGTGCTCTTGACCCGCTCCGCCCCCTTCCCTGGAGGGAGCACCCT
CTGGACAGACAGAACCATCTGAGGCTCACATTTGGGTTTTGTGACAAGAAGGGGACGTGT
TGGGTTTTTCTTCCTTACACTATATTTTGACTGCACATATGTCTTTAACCCAGGAGCCCA
AGGGTAGACAAAGGAGGACTGAGGTAATCAATTTTGCACCTTTTTTTATTTTTATTTTTT
GTCTTTAGTGGTAACTTCCTTCCCTTTTATCTTTCTTCATCCTTCCCAGTCCTCTGCCCT
GATCTGTATAACTCTTATCTTGGGTACTTGAGCAGATGGAATATTCCAGAGGTGGGGGGT
GGGGGGGAAGGGGAGAAATCCAAAACAAAGTGTTCTTGCTCTGACAGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|12840408|dbj|BAB24841.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|12840408|dbj|BAB24841.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               243-361, - strand, RNAz p=0.94795
               

               
               402-673, - strand, RNAz p=0.755924
               

               
               714-933, + strand, RNAz p=0.937946

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               243-361, - strand, RNAz p=0.94795
               

               
               402-673, - strand, RNAz p=0.755924
               

               
               714-933, + strand, RNAz p=0.937946

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_012316, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_012316, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               243-948, gnl|bosTau2|chr2 (73467781-73468506)
               

               
               243-948, gnl|Hg17|chr1 (32305400-32306111)
               

               
               243-948, gnl|Mm7|chr4 (129092827-129092130)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               243-948, gnl|bosTau2|chr2 (73467781-73468506)
               

               
               243-948, gnl|Hg17|chr1 (32305400-32306111)
               

               
               243-948, gnl|Mm7|chr4 (129092827-129092130)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               sme (0.305437)
               

               
               cki (0.165235)
               

               
               nca (0.136874)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               cki (0.165235)
               

               
               nca (0.136874)

	243-361, - strand, RNAz p=0.94795
	402-673, - strand, RNAz p=0.755924
	714-933, + strand, RNAz p=0.937946

	243-948, gnl\|bosTau2\|chr2 (73467781-73468506)
	243-948, gnl\|Hg17\|chr1 (32305400-32306111)
	243-948, gnl\|Mm7\|chr4 (129092827-129092130)