Non-Coding RNA Search

Ss1.1-rnca22b_h2.5

Sequence:


               
               GGAAACCGAGCCTATTCACAATACGACAGATTCCACATAGGAAATGAGAAGCAAAATTAC
AGGTTGTATTTAAAGGGTCACAGTGGGACAGCAGGAAAACAGAGCAGCCTGATCTTACAT
GGTGCTGATTTCAGCACTAAAGATGCTGATAATGACAACTGCATGTGCAAATGTGCCCTC
ATGCTAACAGGAGGCTGGTGGTTTGATGCTTGTGGCCCATCCAATCTAAATGGAATGTTC
TATACAGCGGGACAGAACCATGGAAAACTGAATGGGATAAAGTGGCATTACTTCAAAGGG
CCCAGTTACTCTTTACGTTCCACAACTATGATGATTCGACCTTTGGACTTTTGAAAGTAC
AATATCAGAAGCGATCATAAAAGCCACAGAGAAATCTGGAGAAGCCACCAAATGAGAAAT
TGCGTGAAAACTTCTGAGACAAACAGTATCGTCTCCCTTCCAGCAACAAGTAGCAGTTAT
GTGAAATCACCAAGGTTCTTGACTGTGAATGTAGAATCTTTTGAGTTCACAGAAGTCTCT
ACTTGGGGTGACTGTGTTCATATGGCTTGACTACAGAGAATGCCACTCACTGTCATGCTT
TAAAAAGGGAAGAAACTGTTTAGCTCTCTGTGCTTCAAACTACTACTGGATCTTATTTTG
GAACTTTGGTAGCCAGATGATAAACATGGTCTATTTCATGTAAAACGGAAGACAAATAAG
AAAATAGGAACAACAACAAAAAAAGAGTATACATGAAGGATAAAAACAGGCCTGCTATAA
TTCTTTGGAAAAGATGTGTTGCACCAATAAATGGTGTTATTTCTATGCAAACCCACTAAC
AATAAGTTTGTACTGTTGCACAATTTTAATAAAAGTTCAGAAAGATTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAACCGAGCCTATTCACAATACGACAGATTCCACATAGGAAATGAGAAGCAAAATTAC
AGGTTGTATTTAAAGGGTCACAGTGGGACAGCAGGAAAACAGAGCAGCCTGATCTTACAT
GGTGCTGATTTCAGCACTAAAGATGCTGATAATGACAACTGCATGTGCAAATGTGCCCTC
ATGCTAACAGGAGGCTGGTGGTTTGATGCTTGTGGCCCATCCAATCTAAATGGAATGTTC
TATACAGCGGGACAGAACCATGGAAAACTGAATGGGATAAAGTGGCATTACTTCAAAGGG
CCCAGTTACTCTTTACGTTCCACAACTATGATGATTCGACCTTTGGACTTTTGAAAGTAC
AATATCAGAAGCGATCATAAAAGCCACAGAGAAATCTGGAGAAGCCACCAAATGAGAAAT
TGCGTGAAAACTTCTGAGACAAACAGTATCGTCTCCCTTCCAGCAACAAGTAGCAGTTAT
GTGAAATCACCAAGGTTCTTGACTGTGAATGTAGAATCTTTTGAGTTCACAGAAGTCTCT
ACTTGGGGTGACTGTGTTCATATGGCTTGACTACAGAGAATGCCACTCACTGTCATGCTT
TAAAAAGGGAAGAAACTGTTTAGCTCTCTGTGCTTCAAACTACTACTGGATCTTATTTTG
GAACTTTGGTAGCCAGATGATAAACATGGTCTATTTCATGTAAAACGGAAGACAAATAAG
AAAATAGGAACAACAACAAAAAAAGAGTATACATGAAGGATAAAAACAGGCCTGCTATAA
TTCTTTGGAAAAGATGTGTTGCACCAATAAATGGTGTTATTTCTATGCAAACCCACTAAC
AATAAGTTTGTACTGTTGCACAATTTTAATAAAAGTTCAGAAAGATTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IWK0_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IWK0_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               468-587, + strand, RNAz p=0.96721

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               468-587, + strand, RNAz p=0.96721

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001146, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001146, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               192-885, gnl|bosTau2|chr14 (35715051-35714341)
               

               
               192-885, gnl|Hg17|chr8 (108333421-108332752)
               

               
               192-885, gnl|Mm7|chr15 (42435100-42434504)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               192-885, gnl|bosTau2|chr14 (35715051-35714341)
               

               
               192-885, gnl|Hg17|chr8 (108333421-108332752)
               

               
               192-885, gnl|Mm7|chr15 (42435100-42434504)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tes (0.207814)
               

               
               nca (0.136874)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               nca (0.136874)

	192-885, gnl\|bosTau2\|chr14 (35715051-35714341)
	192-885, gnl\|Hg17\|chr8 (108333421-108332752)
	192-885, gnl\|Mm7\|chr15 (42435100-42434504)