Non-Coding RNA Search

Ss1.1-rnca23b_b11.5

Sequence:


               
               ACTCAATCTGTGTCCCTCACTCCTGGGAGCCTGCCTTCTCACTCCAGGACTGCAAAAGGA
AGCAATCCCCAAAATGAAGACAGCTTTCATTTTGCTCAGCATTTTGGGAATGGCCTGTGC
TTTCTCGATGAAAAATTTCCATCGAAGAGCCAAGTTAGAGGATCCTGAAGAAAATGGGGT
CTTTAAGTACAGGCCTCGATATTATCTGTACAAGCACGCCTACTTCTACCCTCCTCTAAA
ACGATTTCCAGTTCAGAGCAGTAGCGACTCCTCTGAAGAAAATGGAAATGGTGATAGCTC
AGAAGAGGAGGAGGAAGAAGAGGAGAATTCAAATGAAGAAGAAAACAACGAAGAGAATGA
AGATTCCGATGGAAATGAAGACGAAGACTCCGAGGCCGAGAATATCACTCTTTCCACCAC
CACACTTGGCTACGGAGGGGACGTAACGCCGGGAACCGCGAGTATAGGTCTCGCTGCCCT
CCAGCTTCCCAAGAAGGCTGGGGATATAGGAAAGAAGTCTGCAAAAGAGGAAGAAAGTGA
TGAAGACGAGGAGGAAGAGGAGGAGAATGAAGAAAATGAAGCAGAAGTGGATGACAACGA
GCAAGGCACCAATGGTACCAGCACCAACAGCACAGAGGTGGACAGTGGCAATGGCCACAG
TGGTGGGGACAATGGAGAAGAAGGCGACCAAGAGAGTGTCACTGAAGCCCAAGGAACCAC
CGTGGCTGGAGAGCAGGACAACGGTGGCGCCAAGACCACGACCTCTCCGAATGGTGGGCT
TGAACCAACACCTCCACCCCAGGACATCTCTGGGACCACCCTGCCTCCGTCTGGGAAAAC
CACCACCCCTGAGTACGAGGGGGAGTATGAACAGACAGGCGCCCACGAGTATGACAACGG
ATACGAAATCTACGAAAGCGAGAATGGGGAACCTCGTGGGGACAGTTACCGAGCCTACGA
GGATGAGTACAGCTACTACAAAGGGCGCAGCTACAACAGCTATGGGGGCCACGATTACTA
CTAGGTCCCTCGAAGGCCTGGACTGGAGCGATTGCATCCATTCTGGCATTTGTGTGTGTG
GCTGCCATTTTCCAAGTTCAACTCAGGAAGGTGCAATATAACAAATGTGCGAATTACACA
ACGGGGAATGGTGCTCCTGTTCCAACGTGGTCTTCTGGACTTGCTTCTACAAGAAATGGG
CTTCTTAGGGCTTGTCCCTGGTGTGTTACCAAAAGGTCGTAAAGCAGGGCCCTTTATCAA
GGGGTAAACGAAGGCATGAAATTGTGGGCGCCGGAATATTTTGAGGCTGTAGTTCTATAA
ACGGTATTTTTAAGGTGTTTGCACCCACTGCTAAAACACACTCGTTGTGCAGGAGGTTCT
TCCTGGAAGAGAGTTATTGGCATTCGTTACACCGCAATAAATGTGTAGTTGCTTAATCAC
GATACCTACCCGTCACTGTGTATTAGGTTGAAGTATCATCCTCATGTATTTTTATGTGAC
CTCCATGTATATTCTATCTATGGGTTTATCACAAATAAAGATGCAATCCTTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCAATCTGTGTCCCTCACTCCTGGGAGCCTGCCTTCTCACTCCAGGACTGCAAAAGGA
AGCAATCCCCAAAATGAAGACAGCTTTCATTTTGCTCAGCATTTTGGGAATGGCCTGTGC
TTTCTCGATGAAAAATTTCCATCGAAGAGCCAAGTTAGAGGATCCTGAAGAAAATGGGGT
CTTTAAGTACAGGCCTCGATATTATCTGTACAAGCACGCCTACTTCTACCCTCCTCTAAA
ACGATTTCCAGTTCAGAGCAGTAGCGACTCCTCTGAAGAAAATGGAAATGGTGATAGCTC
AGAAGAGGAGGAGGAAGAAGAGGAGAATTCAAATGAAGAAGAAAACAACGAAGAGAATGA
AGATTCCGATGGAAATGAAGACGAAGACTCCGAGGCCGAGAATATCACTCTTTCCACCAC
CACACTTGGCTACGGAGGGGACGTAACGCCGGGAACCGCGAGTATAGGTCTCGCTGCCCT
CCAGCTTCCCAAGAAGGCTGGGGATATAGGAAAGAAGTCTGCAAAAGAGGAAGAAAGTGA
TGAAGACGAGGAGGAAGAGGAGGAGAATGAAGAAAATGAAGCAGAAGTGGATGACAACGA
GCAAGGCACCAATGGTACCAGCACCAACAGCACAGAGGTGGACAGTGGCAATGGCCACAG
TGGTGGGGACAATGGAGAAGAAGGCGACCAAGAGAGTGTCACTGAAGCCCAAGGAACCAC
CGTGGCTGGAGAGCAGGACAACGGTGGCGCCAAGACCACGACCTCTCCGAATGGTGGGCT
TGAACCAACACCTCCACCCCAGGACATCTCTGGGACCACCCTGCCTCCGTCTGGGAAAAC
CACCACCCCTGAGTACGAGGGGGAGTATGAACAGACAGGCGCCCACGAGTATGACAACGG
ATACGAAATCTACGAAAGCGAGAATGGGGAACCTCGTGGGGACAGTTACCGAGCCTACGA
GGATGAGTACAGCTACTACAAAGGGCGCAGCTACAACAGCTATGGGGGCCACGATTACTA
CTAGGTCCCTCGAAGGCCTGGACTGGAGCGATTGCATCCATTCTGGCATTTGTGTGTGTG
GCTGCCATTTTCCAAGTTCAACTCAGGAAGGTGCAATATAACAAATGTGCGAATTACACA
ACGGGGAATGGTGCTCCTGTTCCAACGTGGTCTTCTGGACTTGCTTCTACAAGAAATGGG
CTTCTTAGGGCTTGTCCCTGGTGTGTTACCAAAAGGTCGTAAAGCAGGGCCCTTTATCAA
GGGGTAAACGAAGGCATGAAATTGTGGGCGCCGGAATATTTTGAGGCTGTAGTTCTATAA
ACGGTATTTTTAAGGTGTTTGCACCCACTGCTAAAACACACTCGTTGTGCAGGAGGTTCT
TCCTGGAAGAGAGTTATTGGCATTCGTTACACCGCAATAAATGTGTAGTTGCTTAATCAC
GATACCTACCCGTCACTGTGTATTAGGTTGAAGTATCATCCTCATGTATTTTTATGTGAC
CTCCATGTATATTCTATCTATGGGTTTATCACAAATAAAGATGCAATCCTTAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|108399|pir||B35204

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|108399|pir||B35204

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               645-752, - strand, RNAz p=0.824057

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               645-752, - strand, RNAz p=0.824057

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               495-1438, gnl|bosTau2|chr6 (15103059-15103980)
               

               
               495-1438, gnl|Hg17|chr4 (89089691-89090651)
               

               
               495-1438, gnl|Mm7|chr5 (103500403-103501365)
               


               
               1452-1551, gnl|bosTau2|chr6 (15104025-15104125)
               

               
               1452-1551, gnl|canFam2|chr32 (14161068-14161302)
               

               
               1452-1551, gnl|dasNov1|scaffold_231932 (7-257)
               

               
               1452-1551, gnl|echTel1|scaffold_288843 (65487-65239)
               

               
               1452-1551, gnl|hg17|chr4 (89090553-89090809)
               

               
               1452-1551, gnl|Hg17|chr4 (89090665-89090762)
               

               
               1452-1551, gnl|loxAfr1|scaffold_27240 (15542-15801)
               

               
               1452-1551, gnl|mm7|chr5 (103501275-103501509)
               

               
               1452-1551, gnl|Mm7|chr5 (103501385-103501466)
               

               
               1452-1551, gnl|monDom2|scaffold_37 (15378118-15377878)
               

               
               1452-1551, gnl|oryCun1|scaffold_209387 (88180-88440)
               

               
               1452-1551, gnl|panTro1|chr3 (105081440-105081696)
               

               
               1452-1551, gnl|rheMac2|chr5 (80767157-80767417)
               

               
               1452-1551, gnl|rn3|chr14 (6549124-6548886)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               495-1438, gnl|bosTau2|chr6 (15103059-15103980)
               

               
               495-1438, gnl|Hg17|chr4 (89089691-89090651)
               

               
               495-1438, gnl|Mm7|chr5 (103500403-103501365)
               


               
               1452-1551, gnl|bosTau2|chr6 (15104025-15104125)
               

               
               1452-1551, gnl|canFam2|chr32 (14161068-14161302)
               

               
               1452-1551, gnl|dasNov1|scaffold_231932 (7-257)
               

               
               1452-1551, gnl|echTel1|scaffold_288843 (65487-65239)
               

               
               1452-1551, gnl|hg17|chr4 (89090553-89090809)
               

               
               1452-1551, gnl|Hg17|chr4 (89090665-89090762)
               

               
               1452-1551, gnl|loxAfr1|scaffold_27240 (15542-15801)
               

               
               1452-1551, gnl|mm7|chr5 (103501275-103501509)
               

               
               1452-1551, gnl|Mm7|chr5 (103501385-103501466)
               

               
               1452-1551, gnl|monDom2|scaffold_37 (15378118-15377878)
               

               
               1452-1551, gnl|oryCun1|scaffold_209387 (88180-88440)
               

               
               1452-1551, gnl|panTro1|chr3 (105081440-105081696)
               

               
               1452-1551, gnl|rheMac2|chr5 (80767157-80767417)
               

               
               1452-1551, gnl|rn3|chr14 (6549124-6548886)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nca (3.01122)
               

               
               nmm (1.19522)
               

               
               nbm (0.695272)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (3.01122)
               

               
               nmm (1.19522)
               

               
               nbm (0.695272)

	495-1438, gnl\|bosTau2\|chr6 (15103059-15103980)
	495-1438, gnl\|Hg17\|chr4 (89089691-89090651)
	495-1438, gnl\|Mm7\|chr5 (103500403-103501365)

	1452-1551, gnl\|bosTau2\|chr6 (15104025-15104125)
	1452-1551, gnl\|canFam2\|chr32 (14161068-14161302)
	1452-1551, gnl\|dasNov1\|scaffold_231932 (7-257)
	1452-1551, gnl\|echTel1\|scaffold_288843 (65487-65239)
	1452-1551, gnl\|hg17\|chr4 (89090553-89090809)
	1452-1551, gnl\|Hg17\|chr4 (89090665-89090762)
	1452-1551, gnl\|loxAfr1\|scaffold_27240 (15542-15801)
	1452-1551, gnl\|mm7\|chr5 (103501275-103501509)
	1452-1551, gnl\|Mm7\|chr5 (103501385-103501466)
	1452-1551, gnl\|monDom2\|scaffold_37 (15378118-15377878)
	1452-1551, gnl\|oryCun1\|scaffold_209387 (88180-88440)
	1452-1551, gnl\|panTro1\|chr3 (105081440-105081696)
	1452-1551, gnl\|rheMac2\|chr5 (80767157-80767417)
	1452-1551, gnl\|rn3\|chr14 (6549124-6548886)