Ss1.1-rnca23b_b5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCGACATCACAGACGTGAAACCAGGAAACTACATTGGCGAGCAAGGCATCACTGTGGGT TGCTGGGATCTCTACCGGCATGACATTGACTGTCAATGGATCGACATCACAGACGTGAAA CCAGGAAACTACATTCTGCAGGTGGTCATCAACCCCGATGCCTTTAGTGAAGAGGCCAAC AGGAAGTTTGAACGCTATCCTGGCCAGACCAGCAACCAGATCATCTAAGGTGCCATCCTC TGCAAACCACCACTGACCCCTAATGCCATTAGGGGTCTGAGGCTGCCATTACCTCAGGAG CTTACCAAGGAATCCTTGATGTCAACAGGCCCACAGCACTCAACCAGTGCATGCTATGGA TGTGGAACTGTCAAGAGGCAGAAGTTACTGCCCTCCTCCCTAGGCCAGCTGTCAGACCTG TGGCTAGGCATGGGGAATCTTCGCTCAGGCCCAGCACCAAGCCGAGCACGCCACAAAGAA GCACACCTGATTAACTGACCGAACAACAGGCGGCAGCGGCTTGTTTTCTTAAAAAAGGAG GTCAGAATGGTCTACACCAGTATCTCCCCTCAGTTCAGGAGATACAGCTTTACCTCTAGC CTTTTTTGTGGGGGGAAAGAGCAGTGCGCCACCCCATGCCCCCATTTTTTAGTATAACAT GTTGCTAGGTATAATTTTATTTTATATAAAAAGTGTTTTTGTGATTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCGACATCACAGACGTGAAACCAGGAAACTACATTGGCGAGCAAGGCATCACTGTGGGT TGCTGGGATCTCTACCGGCATGACATTGACTGTCAATGGATCGACATCACAGACGTGAAA CCAGGAAACTACATTCTGCAGGTGGTCATCAACCCCGATGCCTTTAGTGAAGAGGCCAAC AGGAAGTTTGAACGCTATCCTGGCCAGACCAGCAACCAGATCATCTAAGGTGCCATCCTC TGCAAACCACCACTGACCCCTAATGCCATTAGGGGTCTGAGGCTGCCATTACCTCAGGAG CTTACCAAGGAATCCTTGATGTCAACAGGCCCACAGCACTCAACCAGTGCATGCTATGGA TGTGGAACTGTCAAGAGGCAGAAGTTACTGCCCTCCTCCCTAGGCCAGCTGTCAGACCTG TGGCTAGGCATGGGGAATCTTCGCTCAGGCCCAGCACCAAGCCGAGCACGCCACAAAGAA GCACACCTGATTAACTGACCGAACAACAGGCGGCAGCGGCTTGTTTTCTTAAAAAAGGAG GTCAGAATGGTCTACACCAGTATCTCCCCTCAGTTCAGGAGATACAGCTTTACCTCTAGC CTTTTTTGTGGGGGGAAAGAGCAGTGCGCCACCCCATGCCCCCATTTTTTAGTATAACAT GTTGCTAGGTATAATTTTATTTTATATAAAAAGTGTTTTTGTGATTCC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 196-308, - strand, RNAz p=0.583387 | |
| 589-707, - strand, RNAz p=0.971969 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 196-308, - strand, RNAz p=0.583387 | |
| 589-707, - strand, RNAz p=0.971969 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_145074, - |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 32-144, gnl|bosTau2|chr11 (7756507-7756619) | |
| 32-144, gnl|canFam2|chr17 (51678513-51678415) | |
| 32-144, gnl|danRer3|chr14 (1304376-1304474) | |
| 32-144, gnl|dasNov1|scaffold_10203 (64789-64691) | |
| 32-144, gnl|echTel1|scaffold_295249 (4884-4786) | |
| 32-144, gnl|fr1|chrUn (80251538-80251636) | |
| 32-144, gnl|galGal2|chr22 (1223339-1223241) | |
| 32-144, gnl|hg17|chr2 (74672877-74672975) | |
| 32-144, gnl|Hg17|chr2 (74672991-74672879) | |
| 32-144, gnl|loxAfr1|scaffold_8565 (22403-22501) | |
| 32-144, gnl|mm7|chr6 (83075885-83075787) | |
| 32-144, gnl|Mm7|chr6 (83075769-83075881) | |
| 32-144, gnl|monDom2|scaffold_10 (48129595-48129502) | |
| 32-144, gnl|oryCun1|scaffold_128785 (102-4) | |
| 32-144, gnl|panTro1|chr12 (77077444-77077542) | |
| 32-144, gnl|rheMac2|chr13 (74764404-74764502) | |
| 32-144, gnl|rn3|chr4 (117505874-117505776) | |
| 32-144, gnl|tetNig1|chr10 (11905190-11905288) | |
| 32-144, gnl|xenTro1|scaffold_1403 (51408-51506) | |
| 157-707, gnl|bosTau2|chr11 (7757020-7757573) | |
| 157-707, gnl|Hg17|chr2 (74672459-74671912) | |
| 157-707, gnl|Mm7|chr6 (83076236-83076752) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 32-144, gnl|bosTau2|chr11 (7756507-7756619) | |
| 32-144, gnl|canFam2|chr17 (51678513-51678415) | |
| 32-144, gnl|danRer3|chr14 (1304376-1304474) | |
| 32-144, gnl|dasNov1|scaffold_10203 (64789-64691) | |
| 32-144, gnl|echTel1|scaffold_295249 (4884-4786) | |
| 32-144, gnl|fr1|chrUn (80251538-80251636) | |
| 32-144, gnl|galGal2|chr22 (1223339-1223241) | |
| 32-144, gnl|hg17|chr2 (74672877-74672975) | |
| 32-144, gnl|Hg17|chr2 (74672991-74672879) | |
| 32-144, gnl|loxAfr1|scaffold_8565 (22403-22501) | |
| 32-144, gnl|mm7|chr6 (83075885-83075787) | |
| 32-144, gnl|Mm7|chr6 (83075769-83075881) | |
| 32-144, gnl|monDom2|scaffold_10 (48129595-48129502) | |
| 32-144, gnl|oryCun1|scaffold_128785 (102-4) | |
| 32-144, gnl|panTro1|chr12 (77077444-77077542) | |
| 32-144, gnl|rheMac2|chr13 (74764404-74764502) | |
| 32-144, gnl|rn3|chr4 (117505874-117505776) | |
| 32-144, gnl|tetNig1|chr10 (11905190-11905288) | |
| 32-144, gnl|xenTro1|scaffold_1403 (51408-51506) | |
| 157-707, gnl|bosTau2|chr11 (7757020-7757573) | |
| 157-707, gnl|Hg17|chr2 (74672459-74671912) | |
| 157-707, gnl|Mm7|chr6 (83076236-83076752) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nca (0.684369) | |
| fcc (0.197785) | |
| cut (0.169924) | |
| eli (0.151814) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.684369) | |
| fcc (0.197785) | |
| cut (0.169924) | |
| eli (0.151814) |