Non-Coding RNA Search

Ss1.1-rnca25b_f15.5

Sequence:


               
               CGCAGGCAGAGCGCCCCAGACGCGGGCACCCGGCGTGTACACCGGGCCATGGCGCGCCCC
CCGAGCCCGCGACAGCTGCCGCCCGCGCTCCTGCTGCTGCTGCTGCCACTGCTGCTCAGA
GCAGGGTACTACCTTCCCACAGAAGGCCGGCTCATGAACAGCTGTCTCCAGGCCAGGAGG
AAGTGCCAGGCCAATCCCACTTGCAATGCTACCTACCACTACCTGAGTTCCTGTGCCTCT
AGTAGAAGCATCCCATCACCTGCAGAGGAGCCTTCAGTCCCCAAGGACTGCATGGAAGCA
GCACAGCAACTCAGGAATAGCTCTCTGATGAGCTGCACATGCCACCGGCGCATGAAGAAC
CAAGCTACCTGCCTGGACATCTACTGGACTGTTCACCCTGCCCGCAGCCTTGGTGACTAT
GAGCTGGATGTCTCCCCCTATGAAGACACAGTGACCAGAAAACCCTGGAAAATGAATCTC
AGCAAACTCAGAATGCTCAAACCAGATGGGGATCGCTGCCTCAAGTTCGCCATACTGTGC
ACATTTAATGAGAAGTGTGACCGGATGCGCAAGGCCTATGGGGAGGCTTGCTCGGGGTCC
CGCTGTCAGCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCAGGCAGAGCGCCCCAGACGCGGGCACCCGGCGTGTACACCGGGCCATGGCGCGCCCC
CCGAGCCCGCGACAGCTGCCGCCCGCGCTCCTGCTGCTGCTGCTGCCACTGCTGCTCAGA
GCAGGGTACTACCTTCCCACAGAAGGCCGGCTCATGAACAGCTGTCTCCAGGCCAGGAGG
AAGTGCCAGGCCAATCCCACTTGCAATGCTACCTACCACTACCTGAGTTCCTGTGCCTCT
AGTAGAAGCATCCCATCACCTGCAGAGGAGCCTTCAGTCCCCAAGGACTGCATGGAAGCA
GCACAGCAACTCAGGAATAGCTCTCTGATGAGCTGCACATGCCACCGGCGCATGAAGAAC
CAAGCTACCTGCCTGGACATCTACTGGACTGTTCACCCTGCCCGCAGCCTTGGTGACTAT
GAGCTGGATGTCTCCCCCTATGAAGACACAGTGACCAGAAAACCCTGGAAAATGAATCTC
AGCAAACTCAGAATGCTCAAACCAGATGGGGATCGCTGCCTCAAGTTCGCCATACTGTGC
ACATTTAATGAGAAGTGTGACCGGATGCGCAAGGCCTATGGGGAGGCTTGCTCGGGGTCC
CGCTGTCAGCGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               203-362, - strand, RNAz p=0.973947

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               203-362, - strand, RNAz p=0.973947

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               123-416, gnl|bosTau2|chr7 (34796731-34796438)
               

               
               123-416, gnl|canFam2|chr11 (28909081-28909732)
               

               
               123-416, gnl|dasNov1|scaffold_62716 (3473-4126)
               

               
               123-416, gnl|echTel1|scaffold_292370 (5819-5170)
               

               
               123-416, gnl|hg17|chr5 (137627639-137628285)
               

               
               123-416, gnl|Hg17|chr5 (137628138-137627845)
               

               
               123-416, gnl|loxAfr1|scaffold_15079 (34273-33611)
               

               
               123-416, gnl|mm7|chr18 (35086907-35087541)
               

               
               123-416, gnl|Mm7|chr18 (35087412-35087119)
               

               
               123-416, gnl|monDom2|scaffold_6 (71127579-71126998)
               

               
               123-416, gnl|oryCun1|scaffold_213143 (51937-52546)
               

               
               123-416, gnl|panTro1|chr4 (144229833-144230479)
               

               
               123-416, gnl|rheMac2|chr6 (134675935-134676582)
               

               
               123-416, gnl|rn3|chr18 (27214877-27215496)
               


               
               502-612, gnl|bosTau2|chr7 (34791221-34791111)
               

               
               502-612, gnl|Hg17|chr5 (137621543-137621433)
               

               
               502-612, gnl|Mm7|chr18 (35071883-35071773)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-416, gnl|bosTau2|chr7 (34796731-34796438)
               

               
               123-416, gnl|canFam2|chr11 (28909081-28909732)
               

               
               123-416, gnl|dasNov1|scaffold_62716 (3473-4126)
               

               
               123-416, gnl|echTel1|scaffold_292370 (5819-5170)
               

               
               123-416, gnl|hg17|chr5 (137627639-137628285)
               

               
               123-416, gnl|Hg17|chr5 (137628138-137627845)
               

               
               123-416, gnl|loxAfr1|scaffold_15079 (34273-33611)
               

               
               123-416, gnl|mm7|chr18 (35086907-35087541)
               

               
               123-416, gnl|Mm7|chr18 (35087412-35087119)
               

               
               123-416, gnl|monDom2|scaffold_6 (71127579-71126998)
               

               
               123-416, gnl|oryCun1|scaffold_213143 (51937-52546)
               

               
               123-416, gnl|panTro1|chr4 (144229833-144230479)
               

               
               123-416, gnl|rheMac2|chr6 (134675935-134676582)
               

               
               123-416, gnl|rn3|chr18 (27214877-27215496)
               


               
               502-612, gnl|bosTau2|chr7 (34791221-34791111)
               

               
               502-612, gnl|Hg17|chr5 (137621543-137621433)
               

               
               502-612, gnl|Mm7|chr18 (35071883-35071773)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	123-416, gnl\|bosTau2\|chr7 (34796731-34796438)
	123-416, gnl\|canFam2\|chr11 (28909081-28909732)
	123-416, gnl\|dasNov1\|scaffold_62716 (3473-4126)
	123-416, gnl\|echTel1\|scaffold_292370 (5819-5170)
	123-416, gnl\|hg17\|chr5 (137627639-137628285)
	123-416, gnl\|Hg17\|chr5 (137628138-137627845)
	123-416, gnl\|loxAfr1\|scaffold_15079 (34273-33611)
	123-416, gnl\|mm7\|chr18 (35086907-35087541)
	123-416, gnl\|Mm7\|chr18 (35087412-35087119)
	123-416, gnl\|monDom2\|scaffold_6 (71127579-71126998)
	123-416, gnl\|oryCun1\|scaffold_213143 (51937-52546)
	123-416, gnl\|panTro1\|chr4 (144229833-144230479)
	123-416, gnl\|rheMac2\|chr6 (134675935-134676582)
	123-416, gnl\|rn3\|chr18 (27214877-27215496)

	502-612, gnl\|bosTau2\|chr7 (34791221-34791111)
	502-612, gnl\|Hg17\|chr5 (137621543-137621433)
	502-612, gnl\|Mm7\|chr18 (35071883-35071773)