Non-Coding RNA Search

Ss1.1-rnca27b_j7.5

Sequence:


               
               GAGGCCAGGTGTCCGTGGTCGTCAGTTTAACAGACAGAGAGGTAAACTTCTGACATACTG
ATCGTGTGACAGGATGTGGGGTGGTAATAAAGGCAGTGAGTTTTCTAATCCTTAAGCTCC
CAACGTTATCTAGTTTTTGAAAAGTGTTCCAAGGGTTGATTAAATAATTATACATCGAGC
AAAAGATGTTTACTAATCTATAAGCTTCTTGCAGATAGGTTTGTGTACCATAGGTATATA
ATGAATATGTATTTGTATTTTATTTTTATTCATTTCTTCCTTGAATTCAAAGTAAGAGTT
GGAAAAGCTGAAATGTCATAGTGCTATTATGTAATCATTGCTGTTTTACTTCTTATACAG
TAGAATAAAGCTTTTGTGACTTGTTCAGCTGGTAAAAAAATGTAGAATTTTAACATCTAC
GTTTTCTAACATAACTAGTAGAGATCACCTTCATGTCATAAAAACATTATTCTAATTACT
GTCATGATTCCCATTGAAGATGTGGTGAAATACCTAAGTTTTTTGTCTACATGCCTAACA
TACTTGTTCTTGAAAATTTTTATAATGAGCTGGGATAAGTGAATACTCTAATTAAGCTAA
CTTTTTAAAAGATGCATTCAGTTTAATTTTTTTTTTCTCTTATAGGTGTGAGCCATGCAA
TGGGAGGGAGAGGAGGAATAAATAGAGGAAATATTAATTAAATGTTCTGTAAAATGTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCCAGGTGTCCGTGGTCGTCAGTTTAACAGACAGAGAGGTAAACTTCTGACATACTG
ATCGTGTGACAGGATGTGGGGTGGTAATAAAGGCAGTGAGTTTTCTAATCCTTAAGCTCC
CAACGTTATCTAGTTTTTGAAAAGTGTTCCAAGGGTTGATTAAATAATTATACATCGAGC
AAAAGATGTTTACTAATCTATAAGCTTCTTGCAGATAGGTTTGTGTACCATAGGTATATA
ATGAATATGTATTTGTATTTTATTTTTATTCATTTCTTCCTTGAATTCAAAGTAAGAGTT
GGAAAAGCTGAAATGTCATAGTGCTATTATGTAATCATTGCTGTTTTACTTCTTATACAG
TAGAATAAAGCTTTTGTGACTTGTTCAGCTGGTAAAAAAATGTAGAATTTTAACATCTAC
GTTTTCTAACATAACTAGTAGAGATCACCTTCATGTCATAAAAACATTATTCTAATTACT
GTCATGATTCCCATTGAAGATGTGGTGAAATACCTAAGTTTTTTGTCTACATGCCTAACA
TACTTGTTCTTGAAAATTTTTATAATGAGCTGGGATAAGTGAATACTCTAATTAAGCTAA
CTTTTTAAAAGATGCATTCAGTTTAATTTTTTTTTTCTCTTATAGGTGTGAGCCATGCAA
TGGGAGGGAGAGGAGGAATAAATAGAGGAAATATTAATTAAATGTTCTGTAAAATGTAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               181-300, + strand, RNAz p=0.52582

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               181-300, + strand, RNAz p=0.52582

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-610, gnl|bosTau2|chr16 (49061645-49062275)
               

               
               1-610, gnl|Hg17|chr1 (183015458-183014862)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-610, gnl|bosTau2|chr16 (49061645-49062275)
               

               
               1-610, gnl|Hg17|chr1 (183015458-183014862)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               lin (0.145603)
               

               
               nca (0.136874)
               

               
               kid (0.129735)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               kid (0.129735)

	1-610, gnl\|bosTau2\|chr16 (49061645-49062275)
	1-610, gnl\|Hg17\|chr1 (183015458-183014862)