Non-Coding RNA Search

Ss1.1-rnca28b_j12.5

Sequence:


               
               AGATCCACGAGGTGATCGCGCGCTACAAGACGCTGGTGAGCATGCACCACGACCTCATGC
AGGCGGCGCAGGAGGGCCAGGAGAAGATCGAGCGCGCCAAGGCGAGGCTGGCGCGCTACA
AGGAGGAGAAGGACGACGAGATCCTGCAGCACAACAACGAGCTGGCGCGCCTGCAGATGC
GCTTCGACCGCGCACGCAGCGACGTCATCATCGGGGAATCCCGCTGGGCACACATCCAGA
ACACCGCCGCCAAGAAAACCCTCTTGCTCGGCACCATTAAGATGGCCACGCTGAACCTCT
TCCAGATCGTGAGCAAGCAGCTGAAGGAGGCGACCTTCGTGTCCCTGGAGGACACCCACA
AACAGCTGGACATGATCCAGCAGTTCATCCAGGACCTGTCAGACATCTGGGCGGAGGTGA
AGAAGAAGGAGCAACAGCAAGTCCGGGTTTAAGGAGCAGCCGTGGTCCCGGGAGGTTCGG
AAACCGAGACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCCACGAGGTGATCGCGCGCTACAAGACGCTGGTGAGCATGCACCACGACCTCATGC
AGGCGGCGCAGGAGGGCCAGGAGAAGATCGAGCGCGCCAAGGCGAGGCTGGCGCGCTACA
AGGAGGAGAAGGACGACGAGATCCTGCAGCACAACAACGAGCTGGCGCGCCTGCAGATGC
GCTTCGACCGCGCACGCAGCGACGTCATCATCGGGGAATCCCGCTGGGCACACATCCAGA
ACACCGCCGCCAAGAAAACCCTCTTGCTCGGCACCATTAAGATGGCCACGCTGAACCTCT
TCCAGATCGTGAGCAAGCAGCTGAAGGAGGCGACCTTCGTGTCCCTGGAGGACACCCACA
AACAGCTGGACATGATCCAGCAGTTCATCCAGGACCTGTCAGACATCTGGGCGGAGGTGA
AGAAGAAGGAGCAACAGCAAGTCCGGGTTTAAGGAGCAGCCGTGGTCCCGGGAGGTTCGG
AAACCGAGACGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|29244294|ref|NP_808447.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|29244294|ref|NP_808447.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-216, gnl|bosTau2|chr19 (21070262-21070047)
               

               
               1-216, gnl|Hg17|chr17 (8579647-8579432)
               

               
               1-216, gnl|Mm7|chr11 (68675735-68675950)
               


               
               374-492, gnl|bosTau2|chr19 (21064758-21064640)
               

               
               374-492, gnl|Hg17|chr17 (8574251-8574132)
               

               
               374-492, gnl|Mm7|chr11 (68679223-68679353)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-216, gnl|bosTau2|chr19 (21070262-21070047)
               

               
               1-216, gnl|Hg17|chr17 (8579647-8579432)
               

               
               1-216, gnl|Mm7|chr11 (68675735-68675950)
               


               
               374-492, gnl|bosTau2|chr19 (21064758-21064640)
               

               
               374-492, gnl|Hg17|chr17 (8574251-8574132)
               

               
               374-492, gnl|Mm7|chr11 (68679223-68679353)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.273748)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)
               

               
               nbm (0.0993246)

	1-216, gnl\|bosTau2\|chr19 (21070262-21070047)
	1-216, gnl\|Hg17\|chr17 (8579647-8579432)
	1-216, gnl\|Mm7\|chr11 (68675735-68675950)

	374-492, gnl\|bosTau2\|chr19 (21064758-21064640)
	374-492, gnl\|Hg17\|chr17 (8574251-8574132)
	374-492, gnl\|Mm7\|chr11 (68679223-68679353)