Ss1.1-rnca28b_o2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCTTTGGAGTGTGCCAAGGCCTATCTTCTAATCCATCCAGATGATGAGGATGTTCTAG ACAATGTGGATTACTATGAGAGTCTTTTGGACGACAGCATTGACCCAGGATCTATCGAGG CCAGAGAGGATTTGATGATGTTTGTGAAGCGTCATAAACTGGAGTCAGAATTAATAAAAT CAGCGGCAGAGGGTCTGGGATTTTCATACACTGAGCCGAATTATTGGATTCGATATGGAG GACGACAGGATGAGAATCGGGTCCCTTCAGGAGTGAACGTGGAGGGAGCAGAAGTTCATG GATTATCAATGGGGAAAAAGTCATCACCCAAGTTAGACCGAGATCTAAGAGAAGGTGGCC CTCTCCTCTACGAAAACATCACGTTCGTCTACAACTCAGAGCAGCTGAATGGGACGCAGC GCGTTCTCCTGGACAACGTGTTGTCAGAAGAACAGTGCCGGGAGCTGCACAGCGTTGCCA GTGGGATCATGCTTGTTGGTGATGGATACAGAGGAAAAACTTCGCCTCATACACCCAATG AAAAGTTTGAAGGTGCAACTGTCCTGAAAGCACTCAAATTGGGTTATGAAGGCCGCGTCC CCCTCAAGAGCGCCCGTCTGTTCTATGACATCAGCGAGAAGGCTCGAAAGATTGTAGAAT CCTATTTCATGCTGAACTCAACCCTGTATTTTTCCTACACGCACATGGTCTGCCGAACAG CCCTGTCTGGTCAACAAGATAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCTTTGGAGTGTGCCAAGGCCTATCTTCTAATCCATCCAGATGATGAGGATGTTCTAG ACAATGTGGATTACTATGAGAGTCTTTTGGACGACAGCATTGACCCAGGATCTATCGAGG CCAGAGAGGATTTGATGATGTTTGTGAAGCGTCATAAACTGGAGTCAGAATTAATAAAAT CAGCGGCAGAGGGTCTGGGATTTTCATACACTGAGCCGAATTATTGGATTCGATATGGAG GACGACAGGATGAGAATCGGGTCCCTTCAGGAGTGAACGTGGAGGGAGCAGAAGTTCATG GATTATCAATGGGGAAAAAGTCATCACCCAAGTTAGACCGAGATCTAAGAGAAGGTGGCC CTCTCCTCTACGAAAACATCACGTTCGTCTACAACTCAGAGCAGCTGAATGGGACGCAGC GCGTTCTCCTGGACAACGTGTTGTCAGAAGAACAGTGCCGGGAGCTGCACAGCGTTGCCA GTGGGATCATGCTTGTTGGTGATGGATACAGAGGAAAAACTTCGCCTCATACACCCAATG AAAAGTTTGAAGGTGCAACTGTCCTGAAAGCACTCAAATTGGGTTATGAAGGCCGCGTCC CCCTCAAGAGCGCCCGTCTGTTCTATGACATCAGCGAGAAGGCTCGAAAGATTGTAGAAT CCTATTTCATGCTGAACTCAACCCTGTATTTTTCCTACACGCACATGGTCTGCCGAACAG CCCTGTCTGGTCAACAAGATAGAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-149, gnl|bosTau2|chr1 (47191081-47191229) | |
| 1-149, gnl|Hg17|chr3 (191188145-191187677) | |
| 1-149, gnl|Mm7|chr16 (25646599-25646450) | |
| 353-486, gnl|bosTau2|chr1 (47202944-47203077) | |
| 353-486, gnl|canFam2|chr34 (25060238-25060412) | |
| 353-486, gnl|danRer3|chr22 (15303725-15303863) | |
| 353-486, gnl|dasNov1|scaffold_5526 (43474-43298) | |
| 353-486, gnl|echTel1|scaffold_190248 (5545-5720) | |
| 353-486, gnl|fr1|chrUn (153009265-153009109) | |
| 353-486, gnl|galGal2|chr9 (13417425-13417277) | |
| 353-486, gnl|hg17|chr3 (191175025-191175200) | |
| 353-486, gnl|Hg17|chr3 (191175178-191175045) | |
| 353-486, gnl|loxAfr1|scaffold_2753 (11540-11401) | |
| 353-486, gnl|mm7|chr16 (25633796-25633969) | |
| 353-486, gnl|Mm7|chr16 (25633947-25633814) | |
| 353-486, gnl|monDom2|scaffold_92 (1433286-1433459) | |
| 353-486, gnl|oryCun1|scaffold_203670 (49702-49527) | |
| 353-486, gnl|panTro1|chr2 (195261071-195261246) | |
| 353-486, gnl|rheMac2|chr2 (182295287-182295462) | |
| 353-486, gnl|rn3|chr11 (76874828-76874658) | |
| 353-486, gnl|tetNig1|chr1 (11783506-11783667) | |
| 353-486, gnl|xenTro1|scaffold_148 (1436843-1436694) | |
| 579-731, gnl|bosTau2|chr1 (47204523-47204675) | |
| 579-731, gnl|canFam2|chr34 (25058910-25059091) | |
| 579-731, gnl|danRer3|chr22 (15302242-15302407) | |
| 579-731, gnl|dasNov1|scaffold_5526 (44876-44695) | |
| 579-731, gnl|echTel1|scaffold_190248 (4177-4358) | |
| 579-731, gnl|fr1|chrUn (153009668-153009495) | |
| 579-731, gnl|galGal2|chr9 (13418106-13417927) | |
| 579-731, gnl|hg17|chr3 (191173360-191173543) | |
| 579-731, gnl|Hg17|chr3 (191173515-191173363) | |
| 579-731, gnl|mm7|chr16 (25632367-25632554) | |
| 579-731, gnl|Mm7|chr16 (25632522-25632370) | |
| 579-731, gnl|monDom2|scaffold_92 (1431491-1431668) | |
| 579-731, gnl|oryCun1|scaffold_203670 (51008-50815) | |
| 579-731, gnl|panTro1|chr2 (195259433-195259614) | |
| 579-731, gnl|rheMac2|chr2 (182293969-182294149) | |
| 579-731, gnl|rn3|chr11 (76876255-76876068) | |
| 579-731, gnl|tetNig1|chr1 (11783096-11783255) | |
| 579-731, gnl|xenTro1|scaffold_148 (1441084-1440897) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-149, gnl|bosTau2|chr1 (47191081-47191229) | |
| 1-149, gnl|Hg17|chr3 (191188145-191187677) | |
| 1-149, gnl|Mm7|chr16 (25646599-25646450) | |
| 353-486, gnl|bosTau2|chr1 (47202944-47203077) | |
| 353-486, gnl|canFam2|chr34 (25060238-25060412) | |
| 353-486, gnl|danRer3|chr22 (15303725-15303863) | |
| 353-486, gnl|dasNov1|scaffold_5526 (43474-43298) | |
| 353-486, gnl|echTel1|scaffold_190248 (5545-5720) | |
| 353-486, gnl|fr1|chrUn (153009265-153009109) | |
| 353-486, gnl|galGal2|chr9 (13417425-13417277) | |
| 353-486, gnl|hg17|chr3 (191175025-191175200) | |
| 353-486, gnl|Hg17|chr3 (191175178-191175045) | |
| 353-486, gnl|loxAfr1|scaffold_2753 (11540-11401) | |
| 353-486, gnl|mm7|chr16 (25633796-25633969) | |
| 353-486, gnl|Mm7|chr16 (25633947-25633814) | |
| 353-486, gnl|monDom2|scaffold_92 (1433286-1433459) | |
| 353-486, gnl|oryCun1|scaffold_203670 (49702-49527) | |
| 353-486, gnl|panTro1|chr2 (195261071-195261246) | |
| 353-486, gnl|rheMac2|chr2 (182295287-182295462) | |
| 353-486, gnl|rn3|chr11 (76874828-76874658) | |
| 353-486, gnl|tetNig1|chr1 (11783506-11783667) | |
| 353-486, gnl|xenTro1|scaffold_148 (1436843-1436694) | |
| 579-731, gnl|bosTau2|chr1 (47204523-47204675) | |
| 579-731, gnl|canFam2|chr34 (25058910-25059091) | |
| 579-731, gnl|danRer3|chr22 (15302242-15302407) | |
| 579-731, gnl|dasNov1|scaffold_5526 (44876-44695) | |
| 579-731, gnl|echTel1|scaffold_190248 (4177-4358) | |
| 579-731, gnl|fr1|chrUn (153009668-153009495) | |
| 579-731, gnl|galGal2|chr9 (13418106-13417927) | |
| 579-731, gnl|hg17|chr3 (191173360-191173543) | |
| 579-731, gnl|Hg17|chr3 (191173515-191173363) | |
| 579-731, gnl|mm7|chr16 (25632367-25632554) | |
| 579-731, gnl|Mm7|chr16 (25632522-25632370) | |
| 579-731, gnl|monDom2|scaffold_92 (1431491-1431668) | |
| 579-731, gnl|oryCun1|scaffold_203670 (51008-50815) | |
| 579-731, gnl|panTro1|chr2 (195259433-195259614) | |
| 579-731, gnl|rheMac2|chr2 (182293969-182294149) | |
| 579-731, gnl|rn3|chr11 (76876255-76876068) | |
| 579-731, gnl|tetNig1|chr1 (11783096-11783255) | |
| 579-731, gnl|xenTro1|scaffold_148 (1441084-1440897) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) | |
| cov (0.132153) | |
| eep (0.122564) |