Ss1.1-rnca29b_c10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTGGGAGGAGAGGGTGCCCCTACAAATCCAAGAGGATAGAGCGGGCCAAGGCATCTTT GGGTGGTGGACTGCAGAAGCGGTGACCTGCAGCAGAGGAGTCCTGGTGACACGCAACCAT GACGGACCAGCAGGCTGAAGCCCGGTCCTACCTCAGCGAGGAGATGATCGCTGAGTTCAA GGCCGCCTTCGACATGTTTGACGCTGATGGTGGTGGGGACATCAGCGTCAAGGAGTTGGG CACCGTGATGAGGATGCTGGGCCAGACACCCACCAAAGAGGAGCTGGACGCCATCATCGA GGAGGTGGACGAGGATGGCAGTGGAACCATCGACTTCGAAGAGTTCTTGGTCATGATGGT GCGCCAGATGAAAGAGGACGCCAAGGGGAAGAGTGAGGAGGAGCTGGCTGAGTGCTTCCG CATCTTCGACAGGAACATGGACGGCTACATCGATGCCGAGGAACTGGCTGAGATTTTCCG GGCCTCTGGCGAGCACGTGACGGACGAGGAGCTCGAATCCCTGATGAAAGATGGAGACAA GAACAACGATGGCCGCATTGACTTCGACGAGTTCCTGAAGATGATGGAAGGCGTGCAGTA AGAAGTCGGCCCTCGCCTCCGCCGAGACCGCGCGTCCCTAGGGGCGTGTGCGACACCAAC CCCTACTGGTCCCATTCCCCGCCCCCGGAGGGAGGTGCGGCCCGTTCTGGATCTGTGTCT AGAAGAAATAAAAGGAAACACTACAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTGGGAGGAGAGGGTGCCCCTACAAATCCAAGAGGATAGAGCGGGCCAAGGCATCTTT GGGTGGTGGACTGCAGAAGCGGTGACCTGCAGCAGAGGAGTCCTGGTGACACGCAACCAT GACGGACCAGCAGGCTGAAGCCCGGTCCTACCTCAGCGAGGAGATGATCGCTGAGTTCAA GGCCGCCTTCGACATGTTTGACGCTGATGGTGGTGGGGACATCAGCGTCAAGGAGTTGGG CACCGTGATGAGGATGCTGGGCCAGACACCCACCAAAGAGGAGCTGGACGCCATCATCGA GGAGGTGGACGAGGATGGCAGTGGAACCATCGACTTCGAAGAGTTCTTGGTCATGATGGT GCGCCAGATGAAAGAGGACGCCAAGGGGAAGAGTGAGGAGGAGCTGGCTGAGTGCTTCCG CATCTTCGACAGGAACATGGACGGCTACATCGATGCCGAGGAACTGGCTGAGATTTTCCG GGCCTCTGGCGAGCACGTGACGGACGAGGAGCTCGAATCCCTGATGAAAGATGGAGACAA GAACAACGATGGCCGCATTGACTTCGACGAGTTCCTGAAGATGATGGAAGGCGTGCAGTA AGAAGTCGGCCCTCGCCTCCGCCGAGACCGCGCGTCCCTAGGGGCGTGTGCGACACCAAC CCCTACTGGTCCCATTCCCCGCCCCCGGAGGGAGGTGCGGCCCGTTCTGGATCTGTGTCT AGAAGAAATAAAAGGAAACACTACAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 152-241, - strand, RNAz p=0.988073 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 152-241, - strand, RNAz p=0.988073 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-134, gnl|bosTau2|chr13 (54439908-54439775) | |
| 1-134, gnl|Hg17|chr20 (43889412-43889277) | |
| 1-134, gnl|Mm7|chr2 (164520437-164520302) | |
| 152-586, gnl|bosTau2|chr29 (31193099-31192674) | |
| 152-586, gnl|Hg17|chr14 (89936171-89940802) | |
| 152-586, gnl|Mm7|chr12 (97697754-97701768) | |
| 170-318, gnl|bosTau2|chr13 (54437976-54437828) | |
| 170-318, gnl|canFam2|chr24 (36113826-36113966) | |
| 170-318, gnl|danRer3|chr23 (22120149-22120287) | |
| 170-318, gnl|dasNov1|scaffold_82 (46126-46266) | |
| 170-318, gnl|echTel1|scaffold_234310 (2833-2691) | |
| 170-318, gnl|fr1|chrUn (299235403-299235263) | |
| 170-318, gnl|galGal2|chr20 (10026456-10026595) | |
| 170-318, gnl|hg17|chr20 (43886535-43886675) | |
| 170-318, gnl|Hg17|chr20 (43886688-43886540) | |
| 170-318, gnl|loxAfr1|scaffold_60897 (5806-5948) | |
| 170-318, gnl|mm7|chr2 (164518592-164518732) | |
| 170-318, gnl|Mm7|chr2 (164518745-164518597) | |
| 170-318, gnl|monDom2|scaffold_35 (25148435-25148574) | |
| 170-318, gnl|oryCun1|scaffold_198307 (38218-38075) | |
| 170-318, gnl|rheMac2|chr10 (18675069-18674929) | |
| 170-318, gnl|rn3|chr3 (155713959-155714099) | |
| 170-318, gnl|tetNig1|chrUn_random (51610135-51610274) | |
| 170-318, gnl|xenTro1|scaffold_131 (1697319-1697181) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-134, gnl|bosTau2|chr13 (54439908-54439775) | |
| 1-134, gnl|Hg17|chr20 (43889412-43889277) | |
| 1-134, gnl|Mm7|chr2 (164520437-164520302) | |
| 152-586, gnl|bosTau2|chr29 (31193099-31192674) | |
| 152-586, gnl|Hg17|chr14 (89936171-89940802) | |
| 152-586, gnl|Mm7|chr12 (97697754-97701768) | |
| 170-318, gnl|bosTau2|chr13 (54437976-54437828) | |
| 170-318, gnl|canFam2|chr24 (36113826-36113966) | |
| 170-318, gnl|danRer3|chr23 (22120149-22120287) | |
| 170-318, gnl|dasNov1|scaffold_82 (46126-46266) | |
| 170-318, gnl|echTel1|scaffold_234310 (2833-2691) | |
| 170-318, gnl|fr1|chrUn (299235403-299235263) | |
| 170-318, gnl|galGal2|chr20 (10026456-10026595) | |
| 170-318, gnl|hg17|chr20 (43886535-43886675) | |
| 170-318, gnl|Hg17|chr20 (43886688-43886540) | |
| 170-318, gnl|loxAfr1|scaffold_60897 (5806-5948) | |
| 170-318, gnl|mm7|chr2 (164518592-164518732) | |
| 170-318, gnl|Mm7|chr2 (164518745-164518597) | |
| 170-318, gnl|monDom2|scaffold_35 (25148435-25148574) | |
| 170-318, gnl|oryCun1|scaffold_198307 (38218-38075) | |
| 170-318, gnl|rheMac2|chr10 (18675069-18674929) | |
| 170-318, gnl|rn3|chr3 (155713959-155714099) | |
| 170-318, gnl|tetNig1|chrUn_random (51610135-51610274) | |
| 170-318, gnl|xenTro1|scaffold_131 (1697319-1697181) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| ldo (37.443) | |
| sme (30.2382) | |
| ssp (24.8001) | |
| ste (24.2023) | |
| nms (21.3858) | |
| mas (18.0862) | |
| ese (4.04807) | |
| ton (3.51) | |
| nep (3.12672) | |
| vin (2.66046) | |
| bfe (2.09801) | |
| isp (1.95489) | |
| tbr (1.69596) | |
| eru (1.20048) | |
| nca (0.821243) | |
| jca (0.569801) | |
| lyg (0.532411) | |
| ctl (0.459207) | |
| eye (0.341006) | |
| cki (0.330469) | |
| col (0.195008) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| ova (0.129132) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ldo (37.443) | |
| sme (30.2382) | |
| ssp (24.8001) | |
| ste (24.2023) | |
| nms (21.3858) | |
| mas (18.0862) | |
| ese (4.04807) | |
| ton (3.51) | |
| nep (3.12672) | |
| vin (2.66046) | |
| bfe (2.09801) | |
| isp (1.95489) | |
| tbr (1.69596) | |
| eru (1.20048) | |
| nca (0.821243) | |
| jca (0.569801) | |
| lyg (0.532411) | |
| ctl (0.459207) | |
| eye (0.341006) | |
| cki (0.330469) | |
| col (0.195008) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| ova (0.129132) |