Ss1.1-rnca30b_m8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATGAATCTGTGGACGGTACACTCAAGGAAGTCGTTGTAGGTCCAGAGACCACCTCTTAC AGCCTGTCAGGGCTGAGCCCATCCACCCACTACACGGCCAGGATCCAGGCACTGAATGGG CCCCTGAGGAGCAAGATGTCCCAGACCGTCTTCACCACAATTGGACTCCTGTACCCATTC CCCAGGGACTGCTCCCAAGCAATGCTGAATGGAGACACGACCTCTGGCCTCTACACCATT TACGTGAACAACGACAAAGCCCAGAAGCTGGAAGTCTTCTGTGACATGACCTCTGACGGC GGTGGATGGATCGTGTTCCTGAGACGCAAAAACGGACGCGAGGATTTCTATCGAAACTGG AAGGCCTACGCTGCTGGATTTGGGGACCTAAAAGAAGAATTCTGGCTTGGACTGGATGCG CTGAGCAAAATCACAGCCCAAGGGCAGTACGAGCTCCGGGTGGACCTGCGGGACCACGGG GAGACAGCCTATGCCGTCTATGACAGATTCAGCGTGGGAGACGCCCGGACTCGCTACAAG CTGAAGGTGGAGGGGTACAGCGGGACAGCAGGTGACTCCATGGCCTACCACAACGGCAGA TCCTTCTCCACCTTCGACAAGGACACGGACTCGGCCATCACCAACTGCGCCCTGTCCTAC AAGGGGGCTTTCTGGTACAAGAACTGCCACCGTGTCAACCTGATGGGGAGATACGGGGAC AACAGCCACAGTCAGGGTGTCAACTGGTTCCACTGGAAGGGCCATGAATATTCAATCCAG TTTGCTGAGATGAAGCTGAGACCCAGCAACTTCCGGAATCTGGAAGGCAGGCGCAAACGC GCATAAATTCCAGGGACAACTGGGTGAGAGGAGTAGGGCTCAGAGAAAGAAAATAATTTT ACCAAAGCTTTGATGCAACCAGTCCGACCATCCCGCCACACCTGGGCATTTGGCAGAAGT TAAAGGTGACATGGACCGCGGGGGCCGGCGGCAGCAGCACTGGCCTCGCCCACCCTGCAA GTACTTCCTTCAACACCAAAGACCACAGCGTCCAACAGGTTCCTATTTTGTTGTTTGATT CAGCAAAAATCTCCCGGTGACAGCATCACAATGATTTTCCTTCTCTTGGGTGGCTCTGGG AATGGGAGTGGGGTAGGCTGTACAGTGTAGTTTGTTTAGAACCAGCCGTATTTTACACAA AGCTGTATAATTAATTATCGGTATTTTTGTTAGCAGTGATTTCGTGTGTGTCCCGAAGCC GTCCCTTTTTTTTACATTTCAGAAAAGCAATACTGTTTCGATTTTTAAGGATATGATTAA TATTATTAATATAATAATGATGATGATGATGTAAACTAAGGATTTTTAAAGACGTCTTCC TTTCCAAAACACATCTGGACAGTACCTGATTGTATTTTTTTTTTTTTAATAAAAGCACAA GTACTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATGAATCTGTGGACGGTACACTCAAGGAAGTCGTTGTAGGTCCAGAGACCACCTCTTAC AGCCTGTCAGGGCTGAGCCCATCCACCCACTACACGGCCAGGATCCAGGCACTGAATGGG CCCCTGAGGAGCAAGATGTCCCAGACCGTCTTCACCACAATTGGACTCCTGTACCCATTC CCCAGGGACTGCTCCCAAGCAATGCTGAATGGAGACACGACCTCTGGCCTCTACACCATT TACGTGAACAACGACAAAGCCCAGAAGCTGGAAGTCTTCTGTGACATGACCTCTGACGGC GGTGGATGGATCGTGTTCCTGAGACGCAAAAACGGACGCGAGGATTTCTATCGAAACTGG AAGGCCTACGCTGCTGGATTTGGGGACCTAAAAGAAGAATTCTGGCTTGGACTGGATGCG CTGAGCAAAATCACAGCCCAAGGGCAGTACGAGCTCCGGGTGGACCTGCGGGACCACGGG GAGACAGCCTATGCCGTCTATGACAGATTCAGCGTGGGAGACGCCCGGACTCGCTACAAG CTGAAGGTGGAGGGGTACAGCGGGACAGCAGGTGACTCCATGGCCTACCACAACGGCAGA TCCTTCTCCACCTTCGACAAGGACACGGACTCGGCCATCACCAACTGCGCCCTGTCCTAC AAGGGGGCTTTCTGGTACAAGAACTGCCACCGTGTCAACCTGATGGGGAGATACGGGGAC AACAGCCACAGTCAGGGTGTCAACTGGTTCCACTGGAAGGGCCATGAATATTCAATCCAG TTTGCTGAGATGAAGCTGAGACCCAGCAACTTCCGGAATCTGGAAGGCAGGCGCAAACGC GCATAAATTCCAGGGACAACTGGGTGAGAGGAGTAGGGCTCAGAGAAAGAAAATAATTTT ACCAAAGCTTTGATGCAACCAGTCCGACCATCCCGCCACACCTGGGCATTTGGCAGAAGT TAAAGGTGACATGGACCGCGGGGGCCGGCGGCAGCAGCACTGGCCTCGCCCACCCTGCAA GTACTTCCTTCAACACCAAAGACCACAGCGTCCAACAGGTTCCTATTTTGTTGTTTGATT CAGCAAAAATCTCCCGGTGACAGCATCACAATGATTTTCCTTCTCTTGGGTGGCTCTGGG AATGGGAGTGGGGTAGGCTGTACAGTGTAGTTTGTTTAGAACCAGCCGTATTTTACACAA AGCTGTATAATTAATTATCGGTATTTTTGTTAGCAGTGATTTCGTGTGTGTCCCGAAGCC GTCCCTTTTTTTTACATTTCAGAAAAGCAATACTGTTTCGATTTTTAAGGATATGATTAA TATTATTAATATAATAATGATGATGATGATGTAAACTAAGGATTTTTAAAGACGTCTTCC TTTCCAAAACACATCTGGACAGTACCTGATTGTATTTTTTTTTTTTTAATAAAAGCACAA GTACTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 162-280, - strand, RNAz p=0.612314 | |
| 619-736, - strand, RNAz p=0.533126 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 162-280, - strand, RNAz p=0.612314 | |
| 619-736, - strand, RNAz p=0.533126 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 26-158, gnl|bosTau2|chr8 (56668997-56669129) | |
| 26-158, gnl|Hg17|chr9 (114873520-114873388) | |
| 26-158, gnl|Mm7|chr4 (63401047-63400915) | |
| 162-315, gnl|bosTau2|chr8 (56670732-56670885) | |
| 162-315, gnl|canFam2|chr11 (72114377-72114538) | |
| 162-315, gnl|danRer3|chr5 (22581834-22581670) | |
| 162-315, gnl|dasNov1|scaffold_7548 (43077-43238) | |
| 162-315, gnl|echTel1|scaffold_316768 (149046-149210) | |
| 162-315, gnl|fr1|chrUn (58549010-58549168) | |
| 162-315, gnl|galGal2|chr17 (8295543-8295382) | |
| 162-315, gnl|hg17|chr9 (114872081-114872242) | |
| 162-315, gnl|Hg17|chr9 (114872237-114872084) | |
| 162-315, gnl|loxAfr1|scaffold_2012 (84344-84508) | |
| 162-315, gnl|mm7|chr4 (63400201-63400362) | |
| 162-315, gnl|Mm7|chr4 (63400357-63400204) | |
| 162-315, gnl|monDom2|scaffold_38 (5114207-5114368) | |
| 162-315, gnl|oryCun1|scaffold_184408 (69523-69684) | |
| 162-315, gnl|panTro1|chr11 (99417305-99417466) | |
| 162-315, gnl|rheMac2|chr15 (21056220-21056059) | |
| 162-315, gnl|rn3|chr20 (4129554-4129714) | |
| 162-315, gnl|tetNig1|chrUn_random (1837774-1837615) | |
| 162-315, gnl|xenTro1|scaffold_101 (197711-197872) | |
| 569-736, gnl|bosTau2|chr16 (44945727-44945560) | |
| 569-736, gnl|canFam2|chr7 (27089370-27089172) | |
| 569-736, gnl|danRer3|chr2 (28390015-28389832) | |
| 569-736, gnl|dasNov1|scaffold_577 (47234-47432) | |
| 569-736, gnl|echTel1|scaffold_291942 (47448-47659) | |
| 569-736, gnl|fr1|chrUn (115913562-115913741) | |
| 569-736, gnl|galGal2|chr8 (7060462-7060266) | |
| 569-736, gnl|hg17|chr1 (172025144-172025340) | |
| 569-736, gnl|Hg17|chr1 (172025315-172025148) | |
| 569-736, gnl|loxAfr1|scaffold_1013 (157321-157494) | |
| 569-736, gnl|mm7|chr1 (159885517-159885306) | |
| 569-736, gnl|Mm7|chr1 (159885344-159885511) | |
| 569-736, gnl|monDom2|scaffold_16 (26539359-26539548) | |
| 569-736, gnl|oryCun1|scaffold_206247 (14933-15138) | |
| 569-736, gnl|panTro1|chr1 (154424584-154424780) | |
| 569-736, gnl|rheMac2|chr1 (204923702-204923899) | |
| 569-736, gnl|rn3|chr13 (75358340-75358068) | |
| 569-736, gnl|tetNig1|chr15 (5880594-5880404) | |
| 569-736, gnl|xenTro1|scaffold_197 (1802376-1802561) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 26-158, gnl|bosTau2|chr8 (56668997-56669129) | |
| 26-158, gnl|Hg17|chr9 (114873520-114873388) | |
| 26-158, gnl|Mm7|chr4 (63401047-63400915) | |
| 162-315, gnl|bosTau2|chr8 (56670732-56670885) | |
| 162-315, gnl|canFam2|chr11 (72114377-72114538) | |
| 162-315, gnl|danRer3|chr5 (22581834-22581670) | |
| 162-315, gnl|dasNov1|scaffold_7548 (43077-43238) | |
| 162-315, gnl|echTel1|scaffold_316768 (149046-149210) | |
| 162-315, gnl|fr1|chrUn (58549010-58549168) | |
| 162-315, gnl|galGal2|chr17 (8295543-8295382) | |
| 162-315, gnl|hg17|chr9 (114872081-114872242) | |
| 162-315, gnl|Hg17|chr9 (114872237-114872084) | |
| 162-315, gnl|loxAfr1|scaffold_2012 (84344-84508) | |
| 162-315, gnl|mm7|chr4 (63400201-63400362) | |
| 162-315, gnl|Mm7|chr4 (63400357-63400204) | |
| 162-315, gnl|monDom2|scaffold_38 (5114207-5114368) | |
| 162-315, gnl|oryCun1|scaffold_184408 (69523-69684) | |
| 162-315, gnl|panTro1|chr11 (99417305-99417466) | |
| 162-315, gnl|rheMac2|chr15 (21056220-21056059) | |
| 162-315, gnl|rn3|chr20 (4129554-4129714) | |
| 162-315, gnl|tetNig1|chrUn_random (1837774-1837615) | |
| 162-315, gnl|xenTro1|scaffold_101 (197711-197872) | |
| 569-736, gnl|bosTau2|chr16 (44945727-44945560) | |
| 569-736, gnl|canFam2|chr7 (27089370-27089172) | |
| 569-736, gnl|danRer3|chr2 (28390015-28389832) | |
| 569-736, gnl|dasNov1|scaffold_577 (47234-47432) | |
| 569-736, gnl|echTel1|scaffold_291942 (47448-47659) | |
| 569-736, gnl|fr1|chrUn (115913562-115913741) | |
| 569-736, gnl|galGal2|chr8 (7060462-7060266) | |
| 569-736, gnl|hg17|chr1 (172025144-172025340) | |
| 569-736, gnl|Hg17|chr1 (172025315-172025148) | |
| 569-736, gnl|loxAfr1|scaffold_1013 (157321-157494) | |
| 569-736, gnl|mm7|chr1 (159885517-159885306) | |
| 569-736, gnl|Mm7|chr1 (159885344-159885511) | |
| 569-736, gnl|monDom2|scaffold_16 (26539359-26539548) | |
| 569-736, gnl|oryCun1|scaffold_206247 (14933-15138) | |
| 569-736, gnl|panTro1|chr1 (154424584-154424780) | |
| 569-736, gnl|rheMac2|chr1 (204923702-204923899) | |
| 569-736, gnl|rn3|chr13 (75358340-75358068) | |
| 569-736, gnl|tetNig1|chr15 (5880594-5880404) | |
| 569-736, gnl|xenTro1|scaffold_197 (1802376-1802561) |
| Expressed library(ies): 33 entry(ies) | More info |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
| spc (1.02029) | |
| nca (0.547495) | |
| jca (0.45584) | |
| fat (0.442282) | |
| aor (0.390549) | |
| eru (0.360144) | |
| sin (0.349895) | |
| rec (0.346141) | |
| vin (0.332557) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| sug (0.254582) | |
| ese (0.253004) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ova (0.129132) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 33 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (1.02029) | |
| nca (0.547495) | |
| jca (0.45584) | |
| fat (0.442282) | |
| aor (0.390549) | |
| eru (0.360144) | |
| sin (0.349895) | |
| rec (0.346141) | |
| vin (0.332557) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| sug (0.254582) | |
| ese (0.253004) | |
| nlu (0.191681) | |
| eye (0.170503) | |
| cut (0.169924) | |
| nje (0.16592) | |
| cki (0.165235) | |
| cje (0.165235) | |
| nco (0.161734) | |
| ski (0.146735) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| ova (0.129132) | |
| cly (0.120642) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cty (0.10408) |