Ss1.1-rnca31b_p20.5
|
AGCCATGCTGTGGTAGCCAATGTTCAGCATGTCTTGCATCTAATGAAGCAACACAGTAAA
GTCTTGTGCAATGATCGAGTAATCAACAACGTTCCTTTGGCAAAGCAAGTGCCTTCACGA
GGTGGGAAAAGCAAGAAGTCAGCAACGCCTCCCTCCTCCAGCAGCATTAATGAAGAACTC
TCAGAAGTCTTACAGACTTTACAAGATGAATTTGGGCAGATGAGCTTTGACCACCAGCAG
CTTGCAAAACTTATCCAAGAATCACCAACTGTTGAACTGAAAGACAACCTAGAGTGCGAA
CTGGAGGCATTAGTGGGAAGGATGGAGGCAAAAGCCAATCAGATAACTAAAGTTCGAAAA
TACCAAGCCCAGCTGGAGAAACAGAAGATAGAGAAGCAGAAGAGGGAGTTAAGAACCACC
AAAAAGACTCTTGATGAAGAAGGAAATAGCAGCAGCCGTTCTTCTGCAACCACTGGGACC
ATAAATAAGAAGGACTTTGCCAAACCGAGACCTGGAGAAAAAAGCAGGAAAAATCTTCAG
TTATTGAAGGACATGCAAACTATACAGAATTCATTACAAAGCAATAATTTGTGTTGGGAT
TACTGAGTGGTACCAGGTCATTTTTTATTCACATAATCTGTACCCCATCAATCAGATGCT
GACAGTTTACTTTCCAGGTCTCATACTCTCTTTTGTTGGAATTAATTAATAGCAGGTGTT
AAGGGGCCAACGCTTCATTACACGGGCTTCTTGTGTTACGTATCATAATTAAATGTTAAA
CCATCTAAATGGAAACCAGGGGAGTTTTAAAGGCTGAGAAGCCACCCATACTCTGTTTCT
TTGAGATGAATTTGCTGTACTGAAATGTTGCACTTTGTAAACAAATTACCAATTTTTTAT
TTGTGGGCGTGGTTTTTTTTAAATAGTTCTATATATCTAAGTAAAATTAGGTTTAAATTA
TCAAAACATGAGGCTGTCCCATAGGCAGTCTTTGAAACGTCTCATTTCTAAATCTTCTGG
CATGAATCGCCCATTTCTCCTTTTCAATGCAGCCATTAAAATACACCTTGCTTTGACTAT
TGATGGAAGTTTTCTATATTTAAATATTTATACATATTTAAGAGGATTGTTTTGTTTCGC
TTTTTGAGATTTCAGACATTGATCAATATTAAATACACTTGTAATGATGTTAATCCATTT
TTTTTTTAAGCAAAGCATTCATTTTAAGTCAGTTAACTGAAAATAAGAAAGCATTTTTAA
AGCTAAACAGATTGTTAATGAAATAAGTCAGGTTTTGGAATGAAAAGAATAGGGGTATTG
TAAACATTTGTATTTTTAAATAATACCTGTGTAATCATGCTATTCACTTCAAGGCATTAT
GGTTTTTAATCTTAAAACTTGGAAGAATTCCTTGGATATTTACTTTTATTGGTGTACAGT
GTGAGTGCAGTATTAACTGTACCCATGCAGCTGTCATTGTTAATGATGTAAATCATAATT
TTGAATAGATCAAGACATGTTAACTTTTATAAATCTACCACTGAAATCAATAAAGCAACT
TTTTGAAGGAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCCATGCTGTGGTAGCCAATGTTCAGCATGTCTTGCATCTAATGAAGCAACACAGTAAA
GTCTTGTGCAATGATCGAGTAATCAACAACGTTCCTTTGGCAAAGCAAGTGCCTTCACGA
GGTGGGAAAAGCAAGAAGTCAGCAACGCCTCCCTCCTCCAGCAGCATTAATGAAGAACTC
TCAGAAGTCTTACAGACTTTACAAGATGAATTTGGGCAGATGAGCTTTGACCACCAGCAG
CTTGCAAAACTTATCCAAGAATCACCAACTGTTGAACTGAAAGACAACCTAGAGTGCGAA
CTGGAGGCATTAGTGGGAAGGATGGAGGCAAAAGCCAATCAGATAACTAAAGTTCGAAAA
TACCAAGCCCAGCTGGAGAAACAGAAGATAGAGAAGCAGAAGAGGGAGTTAAGAACCACC
AAAAAGACTCTTGATGAAGAAGGAAATAGCAGCAGCCGTTCTTCTGCAACCACTGGGACC
ATAAATAAGAAGGACTTTGCCAAACCGAGACCTGGAGAAAAAAGCAGGAAAAATCTTCAG
TTATTGAAGGACATGCAAACTATACAGAATTCATTACAAAGCAATAATTTGTGTTGGGAT
TACTGAGTGGTACCAGGTCATTTTTTATTCACATAATCTGTACCCCATCAATCAGATGCT
GACAGTTTACTTTCCAGGTCTCATACTCTCTTTTGTTGGAATTAATTAATAGCAGGTGTT
AAGGGGCCAACGCTTCATTACACGGGCTTCTTGTGTTACGTATCATAATTAAATGTTAAA
CCATCTAAATGGAAACCAGGGGAGTTTTAAAGGCTGAGAAGCCACCCATACTCTGTTTCT
TTGAGATGAATTTGCTGTACTGAAATGTTGCACTTTGTAAACAAATTACCAATTTTTTAT
TTGTGGGCGTGGTTTTTTTTAAATAGTTCTATATATCTAAGTAAAATTAGGTTTAAATTA
TCAAAACATGAGGCTGTCCCATAGGCAGTCTTTGAAACGTCTCATTTCTAAATCTTCTGG
CATGAATCGCCCATTTCTCCTTTTCAATGCAGCCATTAAAATACACCTTGCTTTGACTAT
TGATGGAAGTTTTCTATATTTAAATATTTATACATATTTAAGAGGATTGTTTTGTTTCGC
TTTTTGAGATTTCAGACATTGATCAATATTAAATACACTTGTAATGATGTTAATCCATTT
TTTTTTTAAGCAAAGCATTCATTTTAAGTCAGTTAACTGAAAATAAGAAAGCATTTTTAA
AGCTAAACAGATTGTTAATGAAATAAGTCAGGTTTTGGAATGAAAAGAATAGGGGTATTG
TAAACATTTGTATTTTTAAATAATACCTGTGTAATCATGCTATTCACTTCAAGGCATTAT
GGTTTTTAATCTTAAAACTTGGAAGAATTCCTTGGATATTTACTTTTATTGGTGTACAGT
GTGAGTGCAGTATTAACTGTACCCATGCAGCTGTCATTGTTAATGATGTAAATCATAATT
TTGAATAGATCAAGACATGTTAACTTTTATAAATCTACCACTGAAATCAATAAAGCAACT
TTTTGAAGGAAAAAAAAAAAAAAA
|
|
gi|29747965|gb|AAH50785.1| |
Protein identifier
|
gi|29747965|gb|AAH50785.1| |
|
1-227, gnl|bosTau2|chr15 (3624534-3624308) |
|
1-227, gnl|canFam2|chr21 (8325491-8325682) |
|
1-227, gnl|dasNov1|scaffold_6806 (15178-14987) |
|
1-227, gnl|echTel1|scaffold_278625 (83240-83044) |
|
1-227, gnl|hg17|chr1 (170063429-170063619) |
|
1-227, gnl|Hg17|chr11 (95200610-95200839) |
|
1-227, gnl|loxAfr1|scaffold_105682 (200-4) |
|
1-227, gnl|mm7|chr9 (13647802-13647987) |
|
1-227, gnl|Mm7|chr9 (13648024-13647801) |
|
1-227, gnl|monDom2|scaffold_15 (1372086-1372274) |
|
1-227, gnl|panTro1|chr1 (152424986-152425176) |
|
1-227, gnl|rheMac2|chr1 (203021826-203022016) |
|
1-227, gnl|rn3|chr8 (10611198-10611383) |
| |
|
371-1572, gnl|bosTau2|chr15 (3622660-3621461) |
|
371-1572, gnl|Hg17|chr11 (95203836-95205043) |
|
371-1572, gnl|Mm7|chr9 (13646016-13644984) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-227, gnl|bosTau2|chr15 (3624534-3624308) |
|
1-227, gnl|canFam2|chr21 (8325491-8325682) |
|
1-227, gnl|dasNov1|scaffold_6806 (15178-14987) |
|
1-227, gnl|echTel1|scaffold_278625 (83240-83044) |
|
1-227, gnl|hg17|chr1 (170063429-170063619) |
|
1-227, gnl|Hg17|chr11 (95200610-95200839) |
|
1-227, gnl|loxAfr1|scaffold_105682 (200-4) |
|
1-227, gnl|mm7|chr9 (13647802-13647987) |
|
1-227, gnl|Mm7|chr9 (13648024-13647801) |
|
1-227, gnl|monDom2|scaffold_15 (1372086-1372274) |
|
1-227, gnl|panTro1|chr1 (152424986-152425176) |
|
1-227, gnl|rheMac2|chr1 (203021826-203022016) |
|
1-227, gnl|rn3|chr8 (10611198-10611383) |
| |
|
371-1572, gnl|bosTau2|chr15 (3622660-3621461) |
|
371-1572, gnl|Hg17|chr11 (95203836-95205043) |
|
371-1572, gnl|Mm7|chr9 (13646016-13644984) |
|
tes (0.623441) |
|
tra (0.369276) |
|
rec (0.346141) |
|
isp (0.300752) |
|
cte (0.29274) |
|
liv (0.292569) |
|
nca (0.273748) |
|
sin (0.174948) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
ste (0.135208) |
|
kid (0.129735) |
|
ret (0.128733) |
|
thg (0.126791) |
|
eru (0.120048) |
|
ldo (0.0970026) |
|
tes (0.623441) |
|
tra (0.369276) |
|
rec (0.346141) |
|
isp (0.300752) |
|
cte (0.29274) |
|
liv (0.292569) |
|
nca (0.273748) |
|
sin (0.174948) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
ste (0.135208) |
|
kid (0.129735) |
|
ret (0.128733) |
|
thg (0.126791) |
|
eru (0.120048) |
|
ldo (0.0970026) |
