Ss1.1-rnca32b_b8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTTTG ACTTTGGTTTATTAAAAAACAAAAAAGCCAAAAAAAAAAAAAAAAAACCAACTTTATATA CAAAGTCAAACTGAAATCACGGATTATGGAAAAAGGTGAGACTTATGGGGAACAGGGGAA AAGGTTTGGGCCAGAGCCAATACCACATTCTGAACACGAGGAGCCGGGGGAGGGGTGCGG TGCTGGTTTCTTCTGGCACGTCTGGGGTGGCTGGAACACAGTGTTCACTGGCAAACACGG CCCAACACTGAGCGCTCGCTAGCGCTGCTGACCCCACTCCTGCGATGGCCAAGGGAGCCC CTTCCCCCAGGAACCTGCTCCTGTGACCCGGCAGGACTGTGCATCCAGAGGAAGGGGCTC TTACCCCAGCCACATCCGCGCCTGTTTCTTCAGTTTATTGGCATCAGACCTTACGACAGA CACGAAAAGCCTCTTCCTCCCCTGTCTTATTCTAAACTGGGAGAGGACAGGAAAAAGTCA GCACGAGACGAAAGGGCCCCAGAGGAATCCCAAGGTGGGGGCGCGAAATGACACTGGAGG GCGCAGAGGATGCTGGATCTAGCTGCAGGTGGAACCGGCTTCCTCACTCATCCGTCCCAC ACGGCAGACCCCGCCCTGCCGGCCCGAGCCCCTCCGCAGAGGCTGGGCACAGGGGTCAGC CACCCCTGCCTATGGCTCCCAGGTCCTGCTCCAGCTTCTTTCTGGAACCAAAAGGGCTCT AACATCAGCAGGCTCCATCGTTGATGTCACAGGACAGCCGCTTCCGCACCAGGCCTCTCA GTTGCTGGGGGCTGGCTCCTCCTTCTCTACCCAGCTGTCTGCCTTCTCAACCATTCGCTG CATCTCCAGCTGCAGGGGGGTCAGGCGCCTTCGGAACTCCTGCAGCAGCCGCTGAAGCTG GTTCTTCTGTCGCTCAGCTGTCCGGGCCGCCTCCTCAGCCTCAGCCAGCCGGGTCCGCAG CTCCTGCATTTCCGCTGCCAGTGTCTTGTTCGTCACTTCAGTGGCTGAGAAACGGTTATG GCTCTCCTCCAGCTTCAGCTCCAGTGTGTGAATCTTGTTCTCCAGGTAGAGCCGCCCGCT GTCCTGCTGCTCCGCGCGCTGCAGCAGGTTCCCCACGTCGATGAGGCTGCCATTGTGGGA CACCAGGCCCTTGTGCTCCACAGGGGCGGCCCCCGGCTTTGCGCTCTTCCCAGGAGGAGG TAGCAGGTCCAGGTTTCCGAAGAGAGCTTCCTCAGGGAGCCCCCCGTCTGGGCCCTCTGG GCGGCTGTACTGAAGGCTCCGGTACTGGCAGATGTTCTGGGTCACCACCCTGCTGACCAG CTGTTTGGCCTGCTCTGCGCTGAGTCGGAGCCCAAGGGTGAGGAGGATCCTCTCCAGGTC TCGCCGGTGCAAGTAGCCACACCAGTTGGCATCGAAGAAGACGAAAGCAAGAAGACAGTC CAGAGGGAGCACAGCAGAGGGGTCCAGCTCCTTGGGCATATCCTGAAGAGAAGAGAACTC CATCTCTGACTGGTTTGAGGCAACTGACCGGACCTCGGAATCCTCGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTTTG ACTTTGGTTTATTAAAAAACAAAAAAGCCAAAAAAAAAAAAAAAAAACCAACTTTATATA CAAAGTCAAACTGAAATCACGGATTATGGAAAAAGGTGAGACTTATGGGGAACAGGGGAA AAGGTTTGGGCCAGAGCCAATACCACATTCTGAACACGAGGAGCCGGGGGAGGGGTGCGG TGCTGGTTTCTTCTGGCACGTCTGGGGTGGCTGGAACACAGTGTTCACTGGCAAACACGG CCCAACACTGAGCGCTCGCTAGCGCTGCTGACCCCACTCCTGCGATGGCCAAGGGAGCCC CTTCCCCCAGGAACCTGCTCCTGTGACCCGGCAGGACTGTGCATCCAGAGGAAGGGGCTC TTACCCCAGCCACATCCGCGCCTGTTTCTTCAGTTTATTGGCATCAGACCTTACGACAGA CACGAAAAGCCTCTTCCTCCCCTGTCTTATTCTAAACTGGGAGAGGACAGGAAAAAGTCA GCACGAGACGAAAGGGCCCCAGAGGAATCCCAAGGTGGGGGCGCGAAATGACACTGGAGG GCGCAGAGGATGCTGGATCTAGCTGCAGGTGGAACCGGCTTCCTCACTCATCCGTCCCAC ACGGCAGACCCCGCCCTGCCGGCCCGAGCCCCTCCGCAGAGGCTGGGCACAGGGGTCAGC CACCCCTGCCTATGGCTCCCAGGTCCTGCTCCAGCTTCTTTCTGGAACCAAAAGGGCTCT AACATCAGCAGGCTCCATCGTTGATGTCACAGGACAGCCGCTTCCGCACCAGGCCTCTCA GTTGCTGGGGGCTGGCTCCTCCTTCTCTACCCAGCTGTCTGCCTTCTCAACCATTCGCTG CATCTCCAGCTGCAGGGGGGTCAGGCGCCTTCGGAACTCCTGCAGCAGCCGCTGAAGCTG GTTCTTCTGTCGCTCAGCTGTCCGGGCCGCCTCCTCAGCCTCAGCCAGCCGGGTCCGCAG CTCCTGCATTTCCGCTGCCAGTGTCTTGTTCGTCACTTCAGTGGCTGAGAAACGGTTATG GCTCTCCTCCAGCTTCAGCTCCAGTGTGTGAATCTTGTTCTCCAGGTAGAGCCGCCCGCT GTCCTGCTGCTCCGCGCGCTGCAGCAGGTTCCCCACGTCGATGAGGCTGCCATTGTGGGA CACCAGGCCCTTGTGCTCCACAGGGGCGGCCCCCGGCTTTGCGCTCTTCCCAGGAGGAGG TAGCAGGTCCAGGTTTCCGAAGAGAGCTTCCTCAGGGAGCCCCCCGTCTGGGCCCTCTGG GCGGCTGTACTGAAGGCTCCGGTACTGGCAGATGTTCTGGGTCACCACCCTGCTGACCAG CTGTTTGGCCTGCTCTGCGCTGAGTCGGAGCCCAAGGGTGAGGAGGATCCTCTCCAGGTC TCGCCGGTGCAAGTAGCCACACCAGTTGGCATCGAAGAAGACGAAAGCAAGAAGACAGTC CAGAGGGAGCACAGCAGAGGGGTCCAGCTCCTTGGGCATATCCTGAAGAGAAGAGAACTC CATCTCTGACTGGTTTGAGGCAACTGACCGGACCTCGGAATCCTCGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 321-435, - strand, RNAz p=0.995559 | |
| 393-496, - strand, RNAz p=0.852888 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 321-435, - strand, RNAz p=0.995559 | |
| 393-496, - strand, RNAz p=0.852888 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_021174, - |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 53-884, gnl|bosTau2|chr8 (30926145-30926964) | |
| 53-884, gnl|canFam2|chr25 (37650640-37649554) | |
| 53-884, gnl|dasNov1|scaffold_12149 (20574-21696) | |
| 53-884, gnl|echTel1|scaffold_297672 (15994-17040) | |
| 53-884, gnl|hg17|chr8 (22533044-22534137) | |
| 53-884, gnl|Hg17|chr8 (22533927-22533094) | |
| 53-884, gnl|loxAfr1|scaffold_1644 (19709-18599) | |
| 53-884, gnl|mm7|chr14 (64783457-64782475) | |
| 53-884, gnl|Mm7|chr14 (64782654-64783433) | |
| 53-884, gnl|monDom2|scaffold_1 (72829137-72828071) | |
| 53-884, gnl|oryCun1|scaffold_149348 (17923-18808) | |
| 53-884, gnl|panTro1|chr7 (23469492-23470569) | |
| 53-884, gnl|rheMac2|chr8 (22569255-22570340) | |
| 53-884, gnl|rn3|chr15 (50556006-50555051) | |
| 1084-1287, gnl|bosTau2|chr8 (30927504-30927707) | |
| 1084-1287, gnl|canFam2|chr25 (37651666-37651196) | |
| 1084-1287, gnl|dasNov1|scaffold_12149 (19606-20048) | |
| 1084-1287, gnl|echTel1|scaffold_297672 (15078-15543) | |
| 1084-1287, gnl|fr1|chrUn (165404746-165404309) | |
| 1084-1287, gnl|hg17|chr8 (22532023-22532481) | |
| 1084-1287, gnl|Hg17|chr8 (22532478-22532274) | |
| 1084-1287, gnl|loxAfr1|scaffold_1644 (20942-20330) | |
| 1084-1287, gnl|mm7|chr14 (64784413-64783970) | |
| 1084-1287, gnl|Mm7|chr14 (64783971-64784174) | |
| 1084-1287, gnl|monDom2|scaffold_1 (72830199-72829719) | |
| 1084-1287, gnl|oryCun1|scaffold_149348 (17122-17576) | |
| 1084-1287, gnl|panTro1|chr7 (23468466-23468934) | |
| 1084-1287, gnl|rheMac2|chr8 (22568223-22568689) | |
| 1084-1287, gnl|rn3|chr15 (50556948-50556508) | |
| 1389-1537, gnl|bosTau2|chr8 (30928053-30928201) | |
| 1389-1537, gnl|Hg17|chr8 (22531954-22531806) | |
| 1389-1537, gnl|Mm7|chr14 (64784470-64784618) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-884, gnl|bosTau2|chr8 (30926145-30926964) | |
| 53-884, gnl|canFam2|chr25 (37650640-37649554) | |
| 53-884, gnl|dasNov1|scaffold_12149 (20574-21696) | |
| 53-884, gnl|echTel1|scaffold_297672 (15994-17040) | |
| 53-884, gnl|hg17|chr8 (22533044-22534137) | |
| 53-884, gnl|Hg17|chr8 (22533927-22533094) | |
| 53-884, gnl|loxAfr1|scaffold_1644 (19709-18599) | |
| 53-884, gnl|mm7|chr14 (64783457-64782475) | |
| 53-884, gnl|Mm7|chr14 (64782654-64783433) | |
| 53-884, gnl|monDom2|scaffold_1 (72829137-72828071) | |
| 53-884, gnl|oryCun1|scaffold_149348 (17923-18808) | |
| 53-884, gnl|panTro1|chr7 (23469492-23470569) | |
| 53-884, gnl|rheMac2|chr8 (22569255-22570340) | |
| 53-884, gnl|rn3|chr15 (50556006-50555051) | |
| 1084-1287, gnl|bosTau2|chr8 (30927504-30927707) | |
| 1084-1287, gnl|canFam2|chr25 (37651666-37651196) | |
| 1084-1287, gnl|dasNov1|scaffold_12149 (19606-20048) | |
| 1084-1287, gnl|echTel1|scaffold_297672 (15078-15543) | |
| 1084-1287, gnl|fr1|chrUn (165404746-165404309) | |
| 1084-1287, gnl|hg17|chr8 (22532023-22532481) | |
| 1084-1287, gnl|Hg17|chr8 (22532478-22532274) | |
| 1084-1287, gnl|loxAfr1|scaffold_1644 (20942-20330) | |
| 1084-1287, gnl|mm7|chr14 (64784413-64783970) | |
| 1084-1287, gnl|Mm7|chr14 (64783971-64784174) | |
| 1084-1287, gnl|monDom2|scaffold_1 (72830199-72829719) | |
| 1084-1287, gnl|oryCun1|scaffold_149348 (17122-17576) | |
| 1084-1287, gnl|panTro1|chr7 (23468466-23468934) | |
| 1084-1287, gnl|rheMac2|chr8 (22568223-22568689) | |
| 1084-1287, gnl|rn3|chr15 (50556948-50556508) | |
| 1389-1537, gnl|bosTau2|chr8 (30928053-30928201) | |
| 1389-1537, gnl|Hg17|chr8 (22531954-22531806) | |
| 1389-1537, gnl|Mm7|chr14 (64784470-64784618) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| jca (0.34188) | |
| nbm (0.297974) | |
| fce (0.271592) | |
| ill (0.175593) | |
| eye (0.170503) | |
| csp (0.161186) | |
| pty (0.142714) | |
| nca (0.136874) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jej (0.0989218) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.34188) | |
| nbm (0.297974) | |
| fce (0.271592) | |
| ill (0.175593) | |
| eye (0.170503) | |
| csp (0.161186) | |
| pty (0.142714) | |
| nca (0.136874) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| jej (0.0989218) |