Non-Coding RNA Search

Ss1.1-rnca33b_h17.5

Sequence:


               
               ACGGCACCTGTTCAGGGTCCGAGAGTTCGGATGGCCCTGGGGGGCCAAGCAGCTCCTCCA
CCAGCAGAGAGGGGAAGACCCCCACATGGCCCCCAAATTCTCCCCTCCAGAAGCCGTCAT
CCACTCCATCCTGGGCGCGGGGCAGCAGGCGGATGAGAGCCCCCTCGGGGAAGCTCAGCT
CCTCTGCGCTCTGTCCCGTGTAGCTGTACAAGGCACGAGCCAGGAACGCTGTGGGCTCTG
CCCCCAGGGGATCGTCGCTGTCGCGGCCGCTCTCAGGGAAGGAGAGGTCCGGGAAGTTGA
GGTACCGCTCCGGGACAAAGCCCACCTCACCGTGCTGGTTCCGAGCCTTGACCCACTCGT
CGGCATCTCCCTCCTCTACGACCTCCAGCCACTCGCCCTCCGTGATGGTCAGCTCATCCT
CACGTCCTGCCTGATAGCCGAACACCACATGTGCAGGGCAGGGGAGGGGCCTGGTGGCCA
GGGCTGGGGGGGCAGGCTCCGCGAAGAGCTCCCCAGTCTCCTCACACTCCTCAAAGTCAG
AGAGCTCCGCATCCTCTGTCGTGGGAGAGAGGTCCCTCTGGGACAGCCGGGCCTCGCTGA
GCCGTCGCTCCTGCTCCACCTCATCCTGGGCCCGGGTCATGGCTGGCTTCAGCCAGTGCT
GCACATCCAGGCCAGCGCCCTGCAGCAGGGCCAGGCGGGCAGCGCCCTTCACCTGGCTCA
CTGTGCCGGCGGATGCTCTCCCGTACTTCCTGCAGCCGCTGTTCGATGCCTGGGGCCTCC
CGCTCAGGAGCCTGCTGCCGCCTCTGCTCCAGCCGCTGCAGCACCCGACGCCCGTGGTTC
TCTGGATCTTGTTCTCGGGCAGCTCGGCTGGTCCAGCGCTGAACCTCTTTCTCCAGGCCG
CTCTCCCCAGCCTCGNCTCCTGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGCACCTGTTCAGGGTCCGAGAGTTCGGATGGCCCTGGGGGGCCAAGCAGCTCCTCCA
CCAGCAGAGAGGGGAAGACCCCCACATGGCCCCCAAATTCTCCCCTCCAGAAGCCGTCAT
CCACTCCATCCTGGGCGCGGGGCAGCAGGCGGATGAGAGCCCCCTCGGGGAAGCTCAGCT
CCTCTGCGCTCTGTCCCGTGTAGCTGTACAAGGCACGAGCCAGGAACGCTGTGGGCTCTG
CCCCCAGGGGATCGTCGCTGTCGCGGCCGCTCTCAGGGAAGGAGAGGTCCGGGAAGTTGA
GGTACCGCTCCGGGACAAAGCCCACCTCACCGTGCTGGTTCCGAGCCTTGACCCACTCGT
CGGCATCTCCCTCCTCTACGACCTCCAGCCACTCGCCCTCCGTGATGGTCAGCTCATCCT
CACGTCCTGCCTGATAGCCGAACACCACATGTGCAGGGCAGGGGAGGGGCCTGGTGGCCA
GGGCTGGGGGGGCAGGCTCCGCGAAGAGCTCCCCAGTCTCCTCACACTCCTCAAAGTCAG
AGAGCTCCGCATCCTCTGTCGTGGGAGAGAGGTCCCTCTGGGACAGCCGGGCCTCGCTGA
GCCGTCGCTCCTGCTCCACCTCATCCTGGGCCCGGGTCATGGCTGGCTTCAGCCAGTGCT
GCACATCCAGGCCAGCGCCCTGCAGCAGGGCCAGGCGGGCAGCGCCCTTCACCTGGCTCA
CTGTGCCGGCGGATGCTCTCCCGTACTTCCTGCAGCCGCTGTTCGATGCCTGGGGCCTCC
CGCTCAGGAGCCTGCTGCCGCCTCTGCTCCAGCCGCTGCAGCACCCGACGCCCGTGGTTC
TCTGGATCTTGTTCTCGGGCAGCTCGGCTGGTCCAGCGCTGAACCTCTTTCTCCAGGCCG
CTCTCCCCAGCCTCGNCTCCTGCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26348009|dbj|BAC37653.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26348009|dbj|BAC37653.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               5-119, - strand, RNAz p=0.510345
               

               
               602-721, - strand, RNAz p=0.778342

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               5-119, - strand, RNAz p=0.510345
               

               
               602-721, - strand, RNAz p=0.778342

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC047016, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC047016, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-232, gnl|bosTau2|chr7 (35475353-35475580)
               

               
               5-232, gnl|Hg17|chr5 (141003966-141004193)
               

               
               5-232, gnl|Mm7|chr18 (38338767-38338998)
               


               
               560-721, gnl|bosTau2|chr7 (35477110-35477271)
               

               
               560-721, gnl|Hg17|chr5 (141005522-141005683)
               

               
               560-721, gnl|Mm7|chr18 (38340209-38340370)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-232, gnl|bosTau2|chr7 (35475353-35475580)
               

               
               5-232, gnl|Hg17|chr5 (141003966-141004193)
               

               
               5-232, gnl|Mm7|chr18 (38338767-38338998)
               


               
               560-721, gnl|bosTau2|chr7 (35477110-35477271)
               

               
               560-721, gnl|Hg17|chr5 (141005522-141005683)
               

               
               560-721, gnl|Mm7|chr18 (38340209-38340370)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	5-119, - strand, RNAz p=0.510345
	602-721, - strand, RNAz p=0.778342

	5-232, gnl\|bosTau2\|chr7 (35475353-35475580)
	5-232, gnl\|Hg17\|chr5 (141003966-141004193)
	5-232, gnl\|Mm7\|chr18 (38338767-38338998)

	560-721, gnl\|bosTau2\|chr7 (35477110-35477271)
	560-721, gnl\|Hg17\|chr5 (141005522-141005683)
	560-721, gnl\|Mm7\|chr18 (38340209-38340370)