Ss1.1-rnca35b_f8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCACACACACA CTTTATTTCCTCTCTGAACCCCTCTCCCTTCCTCTCAGGTCTGCTGCCTCTTGGGGCCAG GTGCTGATGGCAGGTCCCACTCCCAGTCCTTAGGCCTGCAGCAGCCGCTGGGCCTCGTAA TCCTCCGGGATGGTGTCATTGCAGCGGTACCGCAGGTTAGCCCAGATGATGTTCTCCTGG GAGAAGCAGAAGACTCCCAAGCGGCCGCCCCGCATGGTTGTATCCAGGACAACATTGCTG TCTGCCACCAGCTCAGGGCCCTCATAGAACCGCACTCTGATGTAGCCCACTTGGGGCCGG TGCTGTAGGAACCAGCGGTAGGATGTCTTGTCCTTCCAGCCCACGTTGCGGGGGTCCTTC CACAGCAGCCGCACCTGTGATGCTGTGTCCCCTGTGTGCCACAGGGCGTTTCGAAGCTGC TCCCCAGGGCCTGTGGAGGACTTCACGGCCTTGAGCTGGATGCCAGGCTCCGCCACGGCG CGGAAGGGGTTTGCCTGCCAGTATGTCTGCTCCATCTGCTTCCACATGACCACATAGAAG CTGGAACTGTCTTGGTAGCCAAAGATGAAACCCGCGTAGTCGTCATCCGTGACTGTGTTC ACGTGGAATGTGCCTTCGAAGTCCACGCCATTGAAGGCCGTGTAACCCACAGCCAGGCCA GGGTCACTGTTCATCGTCTGCACGATCTCCATCCCCTGGTTGAGCACCACCCAGTTGGGG TCTATTTGCGCGTCGCCCTCTGGGTCCAGCACGACGGTCTGGAAGGCCCTGAAGTCGGTG AGGGTGACCTCAGCATTCTCCGGACACACATCAATCTTGTCTACCACCTTGTCCGCATCA AAGTCCCCTTGGCACGCGTCCCCCACGCCGTCCCGGTCCACGTCTTCCTGGCCGGGGTTG GGCACCAGGCGGCAGTTGTCCCGACTATCAGGGACCCCATCATTGTCATCATCGTCGTCA CAGGCATCACCCTGACCATCGTGGTCTGAGTCTTGTTGGGCGCTGTTAGGCACTGTGGGG CAGTTATCTCGAGAGTCCTGATGCCCATCTCCATCCTTGTCTTGGTCGCTGTCACATGCA TCTCCCACAAAGTCGTGGTCCACATCCCTCTGATCTGCATTGCTCTTCTGAGGACAGTTG TCACAGGCATCCCCTATACCATCACCATCACTGTCCTTCTGGTCTGAATTGGGCACCCTG GGGCAGTTGTCCACCGTGTTGCGGATCCGGTCGCCGTCTATGTCGTCGTCGCAGGCGTCG CCTCTGCCGTCCTGATCTGTGTCCTTCTGGTCGTCGTTCTTCTGAGACCGGCAGTTGTCG CACGCATCGCCCCACTTGTCGCCATCCGCATTGCGCTGGTCTGGGTTCCGCACCAGCGGG CAGTTGTCCTGCTCATTGAGGACGCCGTCCCCGTCGGCATCCGGGTCGCAAGCATCTCCG ATGCCGTCGCGATCCACGTCCTCCTGCCCTGAGTTGGGCACCGTCACGCAGTTGTCCTTT CGGCACTGGCGCTCTGAGCAGCGCAGCTTCTCATCCGGAAAGCCGTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCGCCACACACACA CTTTATTTCCTCTCTGAACCCCTCTCCCTTCCTCTCAGGTCTGCTGCCTCTTGGGGCCAG GTGCTGATGGCAGGTCCCACTCCCAGTCCTTAGGCCTGCAGCAGCCGCTGGGCCTCGTAA TCCTCCGGGATGGTGTCATTGCAGCGGTACCGCAGGTTAGCCCAGATGATGTTCTCCTGG GAGAAGCAGAAGACTCCCAAGCGGCCGCCCCGCATGGTTGTATCCAGGACAACATTGCTG TCTGCCACCAGCTCAGGGCCCTCATAGAACCGCACTCTGATGTAGCCCACTTGGGGCCGG TGCTGTAGGAACCAGCGGTAGGATGTCTTGTCCTTCCAGCCCACGTTGCGGGGGTCCTTC CACAGCAGCCGCACCTGTGATGCTGTGTCCCCTGTGTGCCACAGGGCGTTTCGAAGCTGC TCCCCAGGGCCTGTGGAGGACTTCACGGCCTTGAGCTGGATGCCAGGCTCCGCCACGGCG CGGAAGGGGTTTGCCTGCCAGTATGTCTGCTCCATCTGCTTCCACATGACCACATAGAAG CTGGAACTGTCTTGGTAGCCAAAGATGAAACCCGCGTAGTCGTCATCCGTGACTGTGTTC ACGTGGAATGTGCCTTCGAAGTCCACGCCATTGAAGGCCGTGTAACCCACAGCCAGGCCA GGGTCACTGTTCATCGTCTGCACGATCTCCATCCCCTGGTTGAGCACCACCCAGTTGGGG TCTATTTGCGCGTCGCCCTCTGGGTCCAGCACGACGGTCTGGAAGGCCCTGAAGTCGGTG AGGGTGACCTCAGCATTCTCCGGACACACATCAATCTTGTCTACCACCTTGTCCGCATCA AAGTCCCCTTGGCACGCGTCCCCCACGCCGTCCCGGTCCACGTCTTCCTGGCCGGGGTTG GGCACCAGGCGGCAGTTGTCCCGACTATCAGGGACCCCATCATTGTCATCATCGTCGTCA CAGGCATCACCCTGACCATCGTGGTCTGAGTCTTGTTGGGCGCTGTTAGGCACTGTGGGG CAGTTATCTCGAGAGTCCTGATGCCCATCTCCATCCTTGTCTTGGTCGCTGTCACATGCA TCTCCCACAAAGTCGTGGTCCACATCCCTCTGATCTGCATTGCTCTTCTGAGGACAGTTG TCACAGGCATCCCCTATACCATCACCATCACTGTCCTTCTGGTCTGAATTGGGCACCCTG GGGCAGTTGTCCACCGTGTTGCGGATCCGGTCGCCGTCTATGTCGTCGTCGCAGGCGTCG CCTCTGCCGTCCTGATCTGTGTCCTTCTGGTCGTCGTTCTTCTGAGACCGGCAGTTGTCG CACGCATCGCCCCACTTGTCGCCATCCGCATTGCGCTGGTCTGGGTTCCGCACCAGCGGG CAGTTGTCCTGCTCATTGAGGACGCCGTCCCCGTCGGCATCCGGGTCGCAAGCATCTCCG ATGCCGTCGCGATCCACGTCCTCCTGCCCTGAGTTGGGCACCGTCACGCAGTTGTCCTTT CGGCACTGGCGCTCTGAGCAGCGCAGCTTCTCATCCGGAAAGCCGTCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | More info |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
| 197-339, gnl|bosTau2|chr10 (5019110-5019252) | |
| 197-339, gnl|Hg17|chr5 (79414124-79413982) | |
| 197-339, gnl|Mm7|chr13 (89814748-89814890) | |
| 509-707, gnl|bosTau2|chr10 (5022744-5022942) | |
| 509-707, gnl|canFam2|chr3 (29831399-29831272) | |
| 509-707, gnl|danRer3|chr5 (57145749-57145622) | |
| 509-707, gnl|dasNov1|scaffold_73 (9973-9845) | |
| 509-707, gnl|echTel1|scaffold_317528 (100571-100698) | |
| 509-707, gnl|fr1|chrUn (92120212-92120085) | |
| 509-707, gnl|galGal2|chrZ (5247219-5247092) | |
| 509-707, gnl|hg17|chr5 (79410639-79410766) | |
| 509-707, gnl|Hg17|chr5 (79410838-79410640) | |
| 509-707, gnl|loxAfr1|scaffold_9198 (10617-10490) | |
| 509-707, gnl|mm7|chr13 (89817683-89817556) | |
| 509-707, gnl|Mm7|chr13 (89817482-89817680) | |
| 509-707, gnl|monDom2|scaffold_27 (35786932-35786805) | |
| 509-707, gnl|oryCun1|scaffold_186394 (7800-7927) | |
| 509-707, gnl|panTro1|chr4 (35776064-35775956) | |
| 509-707, gnl|rheMac2|chr6 (76282837-76282964) | |
| 509-707, gnl|rn3|chr2 (22934235-22934108) | |
| 509-707, gnl|tetNig1|chr4 (3927439-3927566) | |
| 509-707, gnl|xenTro1|scaffold_183 (1242494-1242367) | |
| 732-932, gnl|bosTau2|chr10 (5024635-5024835) | |
| 732-932, gnl|canFam2|chr3 (29832285-29832105) | |
| 732-932, gnl|danRer3|chr5 (57148145-57147966) | |
| 732-932, gnl|dasNov1|scaffold_73 (10969-10789) | |
| 732-932, gnl|echTel1|scaffold_317528 (99587-99769) | |
| 732-932, gnl|fr1|chrUn (92120637-92120459) | |
| 732-932, gnl|galGal2|chrZ (5248520-5248341) | |
| 732-932, gnl|hg17|chr5 (79409632-79409812) | |
| 732-932, gnl|Hg17|chr5 (79409830-79409630) | |
| 732-932, gnl|loxAfr1|scaffold_9198 (11601-11421) | |
| 732-932, gnl|mm7|chr13 (89818978-89818798) | |
| 732-932, gnl|Mm7|chr13 (89818779-89818978) | |
| 732-932, gnl|monDom2|scaffold_27 (35792486-35792306) | |
| 732-932, gnl|oryCun1|scaffold_209205 (44719-44896) | |
| 732-932, gnl|panTro1|chr4 (35777061-35776881) | |
| 732-932, gnl|rheMac2|chr6 (76281833-76282013) | |
| 732-932, gnl|rn3|chr2 (22935579-22935399) | |
| 732-932, gnl|tetNig1|chr4 (3927030-3927210) | |
| 732-932, gnl|xenTro1|scaffold_183 (1244447-1244267) | |
| 942-1145, gnl|bosTau2|chr10 (28059854-28060057) | |
| 942-1145, gnl|Hg17|chr15 (37672288-37672085) | |
| 942-1145, gnl|Mm7|chr2 (117863521-117863318) | |
| 1151-1288, gnl|bosTau2|chr7 (2223306-2223442) | |
| 1151-1288, gnl|Hg17|chr19 (18758324-18758460) | |
| 1151-1288, gnl|Mm7|chr8 (68833944-68833823) | |
| 1448-1558, gnl|bosTau2|chr7 (2224128-2224238) | |
| 1448-1558, gnl|canFam2|chr20 (47312133-47312019) | |
| 1448-1558, gnl|danRer3|chrNA (81830679-81830791) | |
| 1448-1558, gnl|dasNov1|scaffold_127166 (1245-1359) | |
| 1448-1558, gnl|echTel1|scaffold_317528 (89470-89351) | |
| 1448-1558, gnl|fr1|chrUn (88752587-88752503) | |
| 1448-1558, gnl|galGal2|chr28 (3162575-3162461) | |
| 1448-1558, gnl|hg17|chr19 (18760018-18760132) | |
| 1448-1558, gnl|Hg17|chr19 (18760020-18760130) | |
| 1448-1558, gnl|loxAfr1|scaffold_125402 (103-217) | |
| 1448-1558, gnl|mm7|chr8 (68831959-68831845) | |
| 1448-1558, gnl|Mm7|chr8 (68831955-68831845) | |
| 1448-1558, gnl|monDom2|scaffold_75 (1403630-1403744) | |
| 1448-1558, gnl|oryCun1|scaffold_209205 (43093-42979) | |
| 1448-1558, gnl|panTro1|chr20_random (5234379-5234493) | |
| 1448-1558, gnl|rheMac2|chr19 (18412085-18412199) | |
| 1448-1558, gnl|rn3|chr2 (181339693-181339580) | |
| 1448-1558, gnl|tetNig1|chr1 (14634554-14634666) | |
| 1448-1558, gnl|xenTro1|scaffold_183 (1247026-1247140) |
| Aligned organism(s): 66 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 197-339, gnl|bosTau2|chr10 (5019110-5019252) | |
| 197-339, gnl|Hg17|chr5 (79414124-79413982) | |
| 197-339, gnl|Mm7|chr13 (89814748-89814890) | |
| 509-707, gnl|bosTau2|chr10 (5022744-5022942) | |
| 509-707, gnl|canFam2|chr3 (29831399-29831272) | |
| 509-707, gnl|danRer3|chr5 (57145749-57145622) | |
| 509-707, gnl|dasNov1|scaffold_73 (9973-9845) | |
| 509-707, gnl|echTel1|scaffold_317528 (100571-100698) | |
| 509-707, gnl|fr1|chrUn (92120212-92120085) | |
| 509-707, gnl|galGal2|chrZ (5247219-5247092) | |
| 509-707, gnl|hg17|chr5 (79410639-79410766) | |
| 509-707, gnl|Hg17|chr5 (79410838-79410640) | |
| 509-707, gnl|loxAfr1|scaffold_9198 (10617-10490) | |
| 509-707, gnl|mm7|chr13 (89817683-89817556) | |
| 509-707, gnl|Mm7|chr13 (89817482-89817680) | |
| 509-707, gnl|monDom2|scaffold_27 (35786932-35786805) | |
| 509-707, gnl|oryCun1|scaffold_186394 (7800-7927) | |
| 509-707, gnl|panTro1|chr4 (35776064-35775956) | |
| 509-707, gnl|rheMac2|chr6 (76282837-76282964) | |
| 509-707, gnl|rn3|chr2 (22934235-22934108) | |
| 509-707, gnl|tetNig1|chr4 (3927439-3927566) | |
| 509-707, gnl|xenTro1|scaffold_183 (1242494-1242367) | |
| 732-932, gnl|bosTau2|chr10 (5024635-5024835) | |
| 732-932, gnl|canFam2|chr3 (29832285-29832105) | |
| 732-932, gnl|danRer3|chr5 (57148145-57147966) | |
| 732-932, gnl|dasNov1|scaffold_73 (10969-10789) | |
| 732-932, gnl|echTel1|scaffold_317528 (99587-99769) | |
| 732-932, gnl|fr1|chrUn (92120637-92120459) | |
| 732-932, gnl|galGal2|chrZ (5248520-5248341) | |
| 732-932, gnl|hg17|chr5 (79409632-79409812) | |
| 732-932, gnl|Hg17|chr5 (79409830-79409630) | |
| 732-932, gnl|loxAfr1|scaffold_9198 (11601-11421) | |
| 732-932, gnl|mm7|chr13 (89818978-89818798) | |
| 732-932, gnl|Mm7|chr13 (89818779-89818978) | |
| 732-932, gnl|monDom2|scaffold_27 (35792486-35792306) | |
| 732-932, gnl|oryCun1|scaffold_209205 (44719-44896) | |
| 732-932, gnl|panTro1|chr4 (35777061-35776881) | |
| 732-932, gnl|rheMac2|chr6 (76281833-76282013) | |
| 732-932, gnl|rn3|chr2 (22935579-22935399) | |
| 732-932, gnl|tetNig1|chr4 (3927030-3927210) | |
| 732-932, gnl|xenTro1|scaffold_183 (1244447-1244267) | |
| 942-1145, gnl|bosTau2|chr10 (28059854-28060057) | |
| 942-1145, gnl|Hg17|chr15 (37672288-37672085) | |
| 942-1145, gnl|Mm7|chr2 (117863521-117863318) | |
| 1151-1288, gnl|bosTau2|chr7 (2223306-2223442) | |
| 1151-1288, gnl|Hg17|chr19 (18758324-18758460) | |
| 1151-1288, gnl|Mm7|chr8 (68833944-68833823) | |
| 1448-1558, gnl|bosTau2|chr7 (2224128-2224238) | |
| 1448-1558, gnl|canFam2|chr20 (47312133-47312019) | |
| 1448-1558, gnl|danRer3|chrNA (81830679-81830791) | |
| 1448-1558, gnl|dasNov1|scaffold_127166 (1245-1359) | |
| 1448-1558, gnl|echTel1|scaffold_317528 (89470-89351) | |
| 1448-1558, gnl|fr1|chrUn (88752587-88752503) | |
| 1448-1558, gnl|galGal2|chr28 (3162575-3162461) | |
| 1448-1558, gnl|hg17|chr19 (18760018-18760132) | |
| 1448-1558, gnl|Hg17|chr19 (18760020-18760130) | |
| 1448-1558, gnl|loxAfr1|scaffold_125402 (103-217) | |
| 1448-1558, gnl|mm7|chr8 (68831959-68831845) | |
| 1448-1558, gnl|Mm7|chr8 (68831955-68831845) | |
| 1448-1558, gnl|monDom2|scaffold_75 (1403630-1403744) | |
| 1448-1558, gnl|oryCun1|scaffold_209205 (43093-42979) | |
| 1448-1558, gnl|panTro1|chr20_random (5234379-5234493) | |
| 1448-1558, gnl|rheMac2|chr19 (18412085-18412199) | |
| 1448-1558, gnl|rn3|chr2 (181339693-181339580) | |
| 1448-1558, gnl|tetNig1|chr1 (14634554-14634666) | |
| 1448-1558, gnl|xenTro1|scaffold_183 (1247026-1247140) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nca (3.1481) | |
| jca (0.34188) | |
| cte (0.29274) | |
| mas (0.210305) | |
| nbm (0.0993246) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (3.1481) | |
| jca (0.34188) | |
| cte (0.29274) | |
| mas (0.210305) | |
| nbm (0.0993246) |