Non-Coding RNA Search

Ss1.1-rnco1904b_f9.5

Sequence:


               
               CTCAAAGTGGGAATTGGTTATTTTCCACCGTTTACAGCTTGGGGGAATCTGGGGTGTTGA
ATTGTTTCGTCTCTGACGGTTTACCTCCATGGGGGCTGCATAAAGTCAGCTGCGCTCACT
CTTTTTACTAGTATTCATTTACTCCTTGGGACGCATCACAGCTGTCAGTAGTATTGTTGG
GCAGGGATGAGAGTCCCGTGTCTAGATTTGGCCTCAGATCTTGGCCACTGGGGCGGGGTG
TTCGGTGGACCAAGAGCACTAGCAGGGAAACACTGGGAGGCGGGGGCGGGGCGGGGGAAG
AACTCCCACATCTTTAAGACTCTGGTCTAACCTCCCTCCTCATCTGCCAACCAACTTTAT
TTACAAGGCCATGAATGGTCAGTGGTTTTCTTTCCACCACAGTCTGAGGATCTTACCTTT
CCTTAAGTGACCCAGAGCAGCTGTACTGTGTTTAGATGGAACATGTTAAGCTTTTATGAG
ATTCTATTTTTGGTAAGTTCATGTTCCTGGGACACTTGGAGAAAGCAGTGAGAGCCACTG
TCTGTGCCAAAACCCACCAGGCTGACCCTCAAACGTAGCAGATCTAGGAAAAGAGTGAAA
TAGTATCTGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAAAGTGGGAATTGGTTATTTTCCACCGTTTACAGCTTGGGGGAATCTGGGGTGTTGA
ATTGTTTCGTCTCTGACGGTTTACCTCCATGGGGGCTGCATAAAGTCAGCTGCGCTCACT
CTTTTTACTAGTATTCATTTACTCCTTGGGACGCATCACAGCTGTCAGTAGTATTGTTGG
GCAGGGATGAGAGTCCCGTGTCTAGATTTGGCCTCAGATCTTGGCCACTGGGGCGGGGTG
TTCGGTGGACCAAGAGCACTAGCAGGGAAACACTGGGAGGCGGGGGCGGGGCGGGGGAAG
AACTCCCACATCTTTAAGACTCTGGTCTAACCTCCCTCCTCATCTGCCAACCAACTTTAT
TTACAAGGCCATGAATGGTCAGTGGTTTTCTTTCCACCACAGTCTGAGGATCTTACCTTT
CCTTAAGTGACCCAGAGCAGCTGTACTGTGTTTAGATGGAACATGTTAAGCTTTTATGAG
ATTCTATTTTTGGTAAGTTCATGTTCCTGGGACACTTGGAGAAAGCAGTGAGAGCCACTG
TCTGTGCCAAAACCCACCAGGCTGACCCTCAAACGTAGCAGATCTAGGAAAAGAGTGAAA
TAGTATCTGGCC

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-237, gnl|bosTau2|chr5 (32372456-32372210)
               

               
               3-237, gnl|Hg17|chr12 (61325458-61325208)
               

               
               3-237, gnl|Mm7|chr10 (122437581-122437826)
               


               
               298-612, gnl|bosTau2|chr5 (32372186-32371885)
               

               
               298-612, gnl|Hg17|chr12 (61325175-61324850)
               

               
               298-612, gnl|Mm7|chr10 (122437872-122438191)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-237, gnl|bosTau2|chr5 (32372456-32372210)
               

               
               3-237, gnl|Hg17|chr12 (61325458-61325208)
               

               
               3-237, gnl|Mm7|chr10 (122437581-122437826)
               


               
               298-612, gnl|bosTau2|chr5 (32372186-32371885)
               

               
               298-612, gnl|Hg17|chr12 (61325175-61324850)
               

               
               298-612, gnl|Mm7|chr10 (122437872-122438191)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               nmm (0.132802)
               

               
               cty (0.10408)

	3-237, gnl\|bosTau2\|chr5 (32372456-32372210)
	3-237, gnl\|Hg17\|chr12 (61325458-61325208)
	3-237, gnl\|Mm7\|chr10 (122437581-122437826)

	298-612, gnl\|bosTau2\|chr5 (32372186-32371885)
	298-612, gnl\|Hg17\|chr12 (61325175-61324850)
	298-612, gnl\|Mm7\|chr10 (122437872-122438191)