Non-Coding RNA Search

Ss1.1-rnco1905b_f18.5

Sequence:


               
               TCCAGTCTGTGTTCCTGTGCGCCCTGCTGATCTTCTGGCTGTGCGTGTACCACGGGATCC
GGGTGCAGGGAGAAAGGAAATGTTTGACTTTCTATGTGCCCAAATTCTTCATTGTTGGAC
TGTTGTGGTTGGCCTCCGTTACGCTCGGGATATGGCAGACAGTTAATGAATTGCACGATC
CAATGTACCAATATCGAGTTGACACAGGAAATTTTCAGGGAATGAAGGTTTTCTTCATGG
TGGTGGCCGCTGTGTACATCCTATACCTTCTGTTCCTGGTGGTGCGGGCATGCTCCGAGC
TGCGGCACATGCCTTATGTAGATCTCAGGTTAAAATTTTTGACTGCATTGACTTTTGTAG
TGCTTGTTATTAGGTAAGAAGACTTTCTTTCTCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGTCTGTGTTCCTGTGCGCCCTGCTGATCTTCTGGCTGTGCGTGTACCACGGGATCC
GGGTGCAGGGAGAAAGGAAATGTTTGACTTTCTATGTGCCCAAATTCTTCATTGTTGGAC
TGTTGTGGTTGGCCTCCGTTACGCTCGGGATATGGCAGACAGTTAATGAATTGCACGATC
CAATGTACCAATATCGAGTTGACACAGGAAATTTTCAGGGAATGAAGGTTTTCTTCATGG
TGGTGGCCGCTGTGTACATCCTATACCTTCTGTTCCTGGTGGTGCGGGCATGCTCCGAGC
TGCGGCACATGCCTTATGTAGATCTCAGGTTAAAATTTTTGACTGCATTGACTTTTGTAG
TGCTTGTTATTAGGTAAGAAGACTTTCTTTCTCTCT

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               216-321, gnl|bosTau2|chr9 (55820744-55820849)
               

               
               216-321, gnl|canFam2|chr1 (51091689-51091760)
               

               
               216-321, gnl|danRer3|chr4 (265357-265428)
               

               
               216-321, gnl|echTel1|scaffold_296576 (51110-51181)
               

               
               216-321, gnl|fr1|chrUn (274155301-274155230)
               

               
               216-321, gnl|galGal2|chr3 (51018298-51018369)
               

               
               216-321, gnl|hg17|chr6 (159016544-159016615)
               

               
               216-321, gnl|Hg17|chr6 (159016542-159016647)
               

               
               216-321, gnl|monDom2|scaffold_0 (45025004-45024933)
               

               
               216-321, gnl|rheMac2|chr4 (104305276-104305205)
               

               
               216-321, gnl|rn3|chr1 (41081693-41081764)
               

               
               216-321, gnl|tetNig1|chr14 (3302859-3302788)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               216-321, gnl|bosTau2|chr9 (55820744-55820849)
               

               
               216-321, gnl|canFam2|chr1 (51091689-51091760)
               

               
               216-321, gnl|danRer3|chr4 (265357-265428)
               

               
               216-321, gnl|echTel1|scaffold_296576 (51110-51181)
               

               
               216-321, gnl|fr1|chrUn (274155301-274155230)
               

               
               216-321, gnl|galGal2|chr3 (51018298-51018369)
               

               
               216-321, gnl|hg17|chr6 (159016544-159016615)
               

               
               216-321, gnl|Hg17|chr6 (159016542-159016647)
               

               
               216-321, gnl|monDom2|scaffold_0 (45025004-45024933)
               

               
               216-321, gnl|rheMac2|chr4 (104305276-104305205)
               

               
               216-321, gnl|rn3|chr1 (41081693-41081764)
               

               
               216-321, gnl|tetNig1|chr14 (3302859-3302788)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	216-321, gnl\|bosTau2\|chr9 (55820744-55820849)
	216-321, gnl\|canFam2\|chr1 (51091689-51091760)
	216-321, gnl\|danRer3\|chr4 (265357-265428)
	216-321, gnl\|echTel1\|scaffold_296576 (51110-51181)
	216-321, gnl\|fr1\|chrUn (274155301-274155230)
	216-321, gnl\|galGal2\|chr3 (51018298-51018369)
	216-321, gnl\|hg17\|chr6 (159016544-159016615)
	216-321, gnl\|Hg17\|chr6 (159016542-159016647)
	216-321, gnl\|monDom2\|scaffold_0 (45025004-45024933)
	216-321, gnl\|rheMac2\|chr4 (104305276-104305205)
	216-321, gnl\|rn3\|chr1 (41081693-41081764)
	216-321, gnl\|tetNig1\|chr14 (3302859-3302788)