Non-Coding RNA Search

Ss1.1-rnco1905b_h13.5

Sequence:


               
               TAATGTAAGTATTGTGCCATTTATGAAATTCTCTACGTGGGCGTACTCCAAATTTCCTTT
GTTTGCATGCACAGGTGGTGGTCGATATGTTCCAGGCTCTTCATCAGGATCTTCTAACAC
ACTCCCTGTAGCAGATCCTTTTACAGGTGGGAAGCAGTTTTGATCAATACGTCTTTCTTC
ACTAAATTTATAGCATTTTACATTATATGATTTTGTGTTTTGAAGAATCCAATAACTGAT
AATTCCCTTTATATTTCCAATTTTGATGGATCTCCTTAACTTCTAATTTTTTCTTTTTCC
TCGAGTACTTTTATAGCTTTCTTCATGACTTTTTAAATAGCATATTTATTAAAATTCATC
ATTTTCTCCAGTGATTCCTTCAGAAAAGTTGTGATAAAGTGAACGTGTTATCTTGTTCTT
GTTGCCCGGGAAAGGACCTGCGGGAATGCTCCATCTTCTGTTCTTTGCAGAAGGAAAACT
AGGAAACGCACCAAAACTGCTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATGTAAGTATTGTGCCATTTATGAAATTCTCTACGTGGGCGTACTCCAAATTTCCTTT
GTTTGCATGCACAGGTGGTGGTCGATATGTTCCAGGCTCTTCATCAGGATCTTCTAACAC
ACTCCCTGTAGCAGATCCTTTTACAGGTGGGAAGCAGTTTTGATCAATACGTCTTTCTTC
ACTAAATTTATAGCATTTTACATTATATGATTTTGTGTTTTGAAGAATCCAATAACTGAT
AATTCCCTTTATATTTCCAATTTTGATGGATCTCCTTAACTTCTAATTTTTTCTTTTTCC
TCGAGTACTTTTATAGCTTTCTTCATGACTTTTTAAATAGCATATTTATTAAAATTCATC
ATTTTCTCCAGTGATTCCTTCAGAAAAGTTGTGATAAAGTGAACGTGTTATCTTGTTCTT
GTTGCCCGGGAAAGGACCTGCGGGAATGCTCCATCTTCTGTTCTTTGCAGAAGGAAAACT
AGGAAACGCACCAAAACTGCTCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               192-291, - strand, RNAz p=0.826461

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               192-291, - strand, RNAz p=0.826461

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-388, gnl|bosTau2|chr8 (10676509-10676901)
               

               
               3-388, gnl|Hg17|chr9 (26907237-26906843)
               

               
               3-388, gnl|Mm7|chr4 (93971130-93970746)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-388, gnl|bosTau2|chr8 (10676509-10676901)
               

               
               3-388, gnl|Hg17|chr9 (26907237-26906843)
               

               
               3-388, gnl|Mm7|chr4 (93971130-93970746)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	3-388, gnl\|bosTau2\|chr8 (10676509-10676901)
	3-388, gnl\|Hg17\|chr9 (26907237-26906843)
	3-388, gnl\|Mm7\|chr4 (93971130-93970746)