Ss1.1-rnco1907b_b9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCACTCGCCATGCCGACTGTCAGCGTGAAGCGCGATGTGCTCTTCCGAGCTCTGGGCC GGACCTACACCAATGAAGAATTTGATGAACTATGTTTTGAATTTGGTCTGGAACTCGATG AAATTACTTCTGAGAAGGAAATTATAAGTAAGGAACAAGGTAATGAAAAGGCACAGGGGG CCTCTGATGTTGTTCTCTACAAAATTGACGTCCCTGCCAATAGATATGATCTCCTTTGTC TGGAAGGATTGGTTCGAGGACTTCAAGTCTTCAAAGAAAGGATAAAGGCTCCAATGTATA AACGGGTAATGCCCAATGGAGAAATCCAGAAATTAATCATCACAGAAGAGACAGCTAAAA TACGCCCGTATGCTGTTGCAGCGGTTCTACGAAACATGAAGTTTACTAAAGATCGGTATG ACAGCTTCATTGAACTTCAGGAGAAATTACATCAGAACATCTGCAGGAAAAGAGCACTTG TTGCTATTGGTACCCATGATTTGGACACTTTGTCAGGCCCATTTACTTACACTGCAAAGA AGCCTGCAGACATCAAATTCAAACCTCTAAATAAGAGCAAGGAATATACAGCCTGTGAAC TGATGAACATATACAAGACTGACAATCAACTTAAACATTATTTACATATAATTGAAAACA AACCTCTGTATCCAGTTATCTATGACAGCAATGGTGTAGTCCTTTCCATGCCTCCAATCA TCAATGGAAATCATTCCAAAATAACAGTGAATACTAGAAATGTATTTATTGAATGCACAG GAACTGACTTTACTAAGGCAAAAATAGTTCTTGATACTATTGTCACCATGTTCAGTGAAT ATTGTGATAATCAGTTTACGGTTGAAGCAGCTGAGGTAGTTTTTCCTAATGGAAAATTAC ATACCTTTCCAGAACTGGCTTACCGAAAGGAGATAGTGAGAGCTGATCTAATTAACAAAA AAATTGGAATCAGAGAAACTCCAGAAAATCTTGCCAAGCTTCTGACCAGGATGTGTTTAA AGTCAGAAGTCATAGGCGATGGGCATCAGATTGAGATTGAGGTCCCTCCGACCAGAGCCG ACATTATCCATGCCTGTGATATCATAGAAGATGCAGCCATTGCTTATGGATATAACAACA TTCAGATGACTCTCCCGAAAACATACACCATAGCTAATCAATTCCCCCTAAATAAGTTCA CAGAACTCCTGAGACATGACATGGCGGCTGCTGGATTCACTGAAGCACTTACCTTTGCCC TGTGCTCTCAAGAAGATATTGCTGATAAACTGGGTTTGGATATCTCTGCAACAAAGGCAG TCCACATAAGTAATCCTAAAACAGCTGAATTTCAGGTGGCACGCACTACCCTTCTTCCTG GCCTCCTAAAAACCATAGCTGCGAATCGGAAGATGCCCCTTCCTCTAAAACTGTTTGAAA TCTCTGACGTTGTAATAAAAGATTCTAGCAGAGATGTAGGTGCAAGAAACTACAGGCATC TCTGTGCTGTTTATTACAACAAGAATCCTGGGTTTGAGATAATCCATGGGCTCCTGGACA GAATCATGCAGCTATTTGCTGTGCCTCCTGGTGAAAAGAAGGGAGGATATGTGATCAAAG CATCAGAAGGCCCTGCGTTCTTCCCTGGCCGCTGCGCTGAGATCTTTGCCCGGGGTCAGA GCATCGGGAAGCTGGGGGTCCTTCATCCTGATGTGATCACTAAATTCGAGCTGACCCTGC CCTGCTCCTGCTTGGAAATCAACATCGAGCCGTTCTTGTGAAGATGGGTCTCTGTTGTGT GGTTATCGCCCCTCGGGCCCCTCTCTCCTTCCCAGTGCCCTTTCAGTCGTCCCCAGATGA ACGTCCACTTGTGCTTGTGCATTAATGTTGAATAAAATACCGAGAAGTGTCAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCACTCGCCATGCCGACTGTCAGCGTGAAGCGCGATGTGCTCTTCCGAGCTCTGGGCC GGACCTACACCAATGAAGAATTTGATGAACTATGTTTTGAATTTGGTCTGGAACTCGATG AAATTACTTCTGAGAAGGAAATTATAAGTAAGGAACAAGGTAATGAAAAGGCACAGGGGG CCTCTGATGTTGTTCTCTACAAAATTGACGTCCCTGCCAATAGATATGATCTCCTTTGTC TGGAAGGATTGGTTCGAGGACTTCAAGTCTTCAAAGAAAGGATAAAGGCTCCAATGTATA AACGGGTAATGCCCAATGGAGAAATCCAGAAATTAATCATCACAGAAGAGACAGCTAAAA TACGCCCGTATGCTGTTGCAGCGGTTCTACGAAACATGAAGTTTACTAAAGATCGGTATG ACAGCTTCATTGAACTTCAGGAGAAATTACATCAGAACATCTGCAGGAAAAGAGCACTTG TTGCTATTGGTACCCATGATTTGGACACTTTGTCAGGCCCATTTACTTACACTGCAAAGA AGCCTGCAGACATCAAATTCAAACCTCTAAATAAGAGCAAGGAATATACAGCCTGTGAAC TGATGAACATATACAAGACTGACAATCAACTTAAACATTATTTACATATAATTGAAAACA AACCTCTGTATCCAGTTATCTATGACAGCAATGGTGTAGTCCTTTCCATGCCTCCAATCA TCAATGGAAATCATTCCAAAATAACAGTGAATACTAGAAATGTATTTATTGAATGCACAG GAACTGACTTTACTAAGGCAAAAATAGTTCTTGATACTATTGTCACCATGTTCAGTGAAT ATTGTGATAATCAGTTTACGGTTGAAGCAGCTGAGGTAGTTTTTCCTAATGGAAAATTAC ATACCTTTCCAGAACTGGCTTACCGAAAGGAGATAGTGAGAGCTGATCTAATTAACAAAA AAATTGGAATCAGAGAAACTCCAGAAAATCTTGCCAAGCTTCTGACCAGGATGTGTTTAA AGTCAGAAGTCATAGGCGATGGGCATCAGATTGAGATTGAGGTCCCTCCGACCAGAGCCG ACATTATCCATGCCTGTGATATCATAGAAGATGCAGCCATTGCTTATGGATATAACAACA TTCAGATGACTCTCCCGAAAACATACACCATAGCTAATCAATTCCCCCTAAATAAGTTCA CAGAACTCCTGAGACATGACATGGCGGCTGCTGGATTCACTGAAGCACTTACCTTTGCCC TGTGCTCTCAAGAAGATATTGCTGATAAACTGGGTTTGGATATCTCTGCAACAAAGGCAG TCCACATAAGTAATCCTAAAACAGCTGAATTTCAGGTGGCACGCACTACCCTTCTTCCTG GCCTCCTAAAAACCATAGCTGCGAATCGGAAGATGCCCCTTCCTCTAAAACTGTTTGAAA TCTCTGACGTTGTAATAAAAGATTCTAGCAGAGATGTAGGTGCAAGAAACTACAGGCATC TCTGTGCTGTTTATTACAACAAGAATCCTGGGTTTGAGATAATCCATGGGCTCCTGGACA GAATCATGCAGCTATTTGCTGTGCCTCCTGGTGAAAAGAAGGGAGGATATGTGATCAAAG CATCAGAAGGCCCTGCGTTCTTCCCTGGCCGCTGCGCTGAGATCTTTGCCCGGGGTCAGA GCATCGGGAAGCTGGGGGTCCTTCATCCTGATGTGATCACTAAATTCGAGCTGACCCTGC CCTGCTCCTGCTTGGAAATCAACATCGAGCCGTTCTTGTGAAGATGGGTCTCTGTTGTGT GGTTATCGCCCCTCGGGCCCCTCTCTCCTTCCCAGTGCCCTTTCAGTCGTCCCCAGATGA ACGTCCACTTGTGCTTGTGCATTAATGTTGAATAAAATACCGAGAAGTGTCAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 245-364, - strand, RNAz p=0.776377 | |
| 683-1071, - strand, RNAz p=0.998627 | |
| 970-1576, + strand, RNAz p=0.907791 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 245-364, - strand, RNAz p=0.776377 | |
| 683-1071, - strand, RNAz p=0.998627 | |
| 970-1576, + strand, RNAz p=0.907791 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 5-1932, gnl|bosTau2|chr6 (14966993-14965074) | |
| 5-1932, gnl|Hg17|chr10 (82527804-82525764) | |
| 126-288, gnl|bosTau2|chr14 (2209552-2209713) | |
| 126-288, gnl|Hg17|chr2 (223333229-223333068) | |
| 126-288, gnl|Mm7|chr1_random (18343049-18342888) | |
| 458-617, gnl|bosTau2|chr14 (2217842-2218001) | |
| 458-617, gnl|canFam2|chr37 (31699128-31699304) | |
| 458-617, gnl|danRer3|chr15 (45599316-45599487) | |
| 458-617, gnl|dasNov1|scaffold_13203 (49100-49284) | |
| 458-617, gnl|echTel1|scaffold_291943 (37200-37373) | |
| 458-617, gnl|fr1|chrUn (120455862-120456019) | |
| 458-617, gnl|galGal2|chr9 (5633932-5633762) | |
| 458-617, gnl|hg17|chr2 (223324599-223324783) | |
| 458-617, gnl|Hg17|chr2 (223324774-223324615) | |
| 458-617, gnl|loxAfr1|scaffold_23989 (34941-35117) | |
| 458-617, gnl|mm7|chr1_random (18335406-18335589) | |
| 458-617, gnl|Mm7|chr1_random (18335580-18335422) | |
| 458-617, gnl|monDom2|scaffold_28 (3398910-3399083) | |
| 458-617, gnl|panTro1|chr13 (113908789-113908973) | |
| 458-617, gnl|rheMac2|chr12 (86499860-86500044) | |
| 458-617, gnl|rn3|chr9 (78034697-78034880) | |
| 458-617, gnl|tetNig1|chr16 (7181979-7181822) | |
| 458-617, gnl|xenTro1|scaffold_209 (1004319-1004499) | |
| 970-1181, gnl|bosTau2|chr14 (2226238-2226449) | |
| 970-1181, gnl|canFam2|chr37 (31690045-31690284) | |
| 970-1181, gnl|danRer3|chr15 (45595026-45595265) | |
| 970-1181, gnl|dasNov1|scaffold_62486 (5584-5823) | |
| 970-1181, gnl|echTel1|scaffold_291943 (30393-30634) | |
| 970-1181, gnl|fr1|chrUn (120454691-120454909) | |
| 970-1181, gnl|galGal2|chr9 (5640336-5640086) | |
| 970-1181, gnl|hg17|chr2 (223314477-223314716) | |
| 970-1181, gnl|Hg17|chr2 (223314707-223314496) | |
| 970-1181, gnl|mm7|chr1 (78688244-78688482) | |
| 970-1181, gnl|Mm7|chr1 (78688473-78688263) | |
| 970-1181, gnl|monDom2|scaffold_28 (3376963-3377202) | |
| 970-1181, gnl|oryCun1|scaffold_205532 (121730-121969) | |
| 970-1181, gnl|panTro1|chr13 (113898652-113898891) | |
| 970-1181, gnl|rheMac2|chr12 (86487901-86488140) | |
| 970-1181, gnl|rn3|chr9 (78027046-78027284) | |
| 970-1181, gnl|tetNig1|chr16 (7183224-7183002) | |
| 970-1181, gnl|xenTro1|scaffold_209 (998097-998316) | |
| 1472-1630, gnl|bosTau2|chr14 (2247336-2247494) | |
| 1472-1630, gnl|canFam2|chr37 (31670933-31671136) | |
| 1472-1630, gnl|danRer3|chr15 (45587208-45587391) | |
| 1472-1630, gnl|dasNov1|scaffold_149144 (3975-3772) | |
| 1472-1630, gnl|echTel1|scaffold_291943 (4028-4225) | |
| 1472-1630, gnl|fr1|chrUn (120453674-120453868) | |
| 1472-1630, gnl|galGal2|chr9 (5651407-5651196) | |
| 1472-1630, gnl|hg17|chr2 (223290148-223290350) | |
| 1472-1630, gnl|Hg17|chr2 (223290308-223290151) | |
| 1472-1630, gnl|loxAfr1|scaffold_23989 (8654-8848) | |
| 1472-1630, gnl|mm7|chr1 (78669059-78669263) | |
| 1472-1630, gnl|Mm7|chr1 (78669220-78669062) | |
| 1472-1630, gnl|monDom2|scaffold_28 (3357666-3357884) | |
| 1472-1630, gnl|oryCun1|scaffold_122917 (6642-6445) | |
| 1472-1630, gnl|panTro1|chr13 (113874632-113874834) | |
| 1472-1630, gnl|rheMac2|chr12 (86464614-86464816) | |
| 1472-1630, gnl|rn3|chr9 (78007166-78007370) | |
| 1472-1630, gnl|tetNig1|chr16 (7184338-7184148) | |
| 1472-1630, gnl|xenTro1|scaffold_209 (989631-989831) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-1932, gnl|bosTau2|chr6 (14966993-14965074) | |
| 5-1932, gnl|Hg17|chr10 (82527804-82525764) | |
| 126-288, gnl|bosTau2|chr14 (2209552-2209713) | |
| 126-288, gnl|Hg17|chr2 (223333229-223333068) | |
| 126-288, gnl|Mm7|chr1_random (18343049-18342888) | |
| 458-617, gnl|bosTau2|chr14 (2217842-2218001) | |
| 458-617, gnl|canFam2|chr37 (31699128-31699304) | |
| 458-617, gnl|danRer3|chr15 (45599316-45599487) | |
| 458-617, gnl|dasNov1|scaffold_13203 (49100-49284) | |
| 458-617, gnl|echTel1|scaffold_291943 (37200-37373) | |
| 458-617, gnl|fr1|chrUn (120455862-120456019) | |
| 458-617, gnl|galGal2|chr9 (5633932-5633762) | |
| 458-617, gnl|hg17|chr2 (223324599-223324783) | |
| 458-617, gnl|Hg17|chr2 (223324774-223324615) | |
| 458-617, gnl|loxAfr1|scaffold_23989 (34941-35117) | |
| 458-617, gnl|mm7|chr1_random (18335406-18335589) | |
| 458-617, gnl|Mm7|chr1_random (18335580-18335422) | |
| 458-617, gnl|monDom2|scaffold_28 (3398910-3399083) | |
| 458-617, gnl|panTro1|chr13 (113908789-113908973) | |
| 458-617, gnl|rheMac2|chr12 (86499860-86500044) | |
| 458-617, gnl|rn3|chr9 (78034697-78034880) | |
| 458-617, gnl|tetNig1|chr16 (7181979-7181822) | |
| 458-617, gnl|xenTro1|scaffold_209 (1004319-1004499) | |
| 970-1181, gnl|bosTau2|chr14 (2226238-2226449) | |
| 970-1181, gnl|canFam2|chr37 (31690045-31690284) | |
| 970-1181, gnl|danRer3|chr15 (45595026-45595265) | |
| 970-1181, gnl|dasNov1|scaffold_62486 (5584-5823) | |
| 970-1181, gnl|echTel1|scaffold_291943 (30393-30634) | |
| 970-1181, gnl|fr1|chrUn (120454691-120454909) | |
| 970-1181, gnl|galGal2|chr9 (5640336-5640086) | |
| 970-1181, gnl|hg17|chr2 (223314477-223314716) | |
| 970-1181, gnl|Hg17|chr2 (223314707-223314496) | |
| 970-1181, gnl|mm7|chr1 (78688244-78688482) | |
| 970-1181, gnl|Mm7|chr1 (78688473-78688263) | |
| 970-1181, gnl|monDom2|scaffold_28 (3376963-3377202) | |
| 970-1181, gnl|oryCun1|scaffold_205532 (121730-121969) | |
| 970-1181, gnl|panTro1|chr13 (113898652-113898891) | |
| 970-1181, gnl|rheMac2|chr12 (86487901-86488140) | |
| 970-1181, gnl|rn3|chr9 (78027046-78027284) | |
| 970-1181, gnl|tetNig1|chr16 (7183224-7183002) | |
| 970-1181, gnl|xenTro1|scaffold_209 (998097-998316) | |
| 1472-1630, gnl|bosTau2|chr14 (2247336-2247494) | |
| 1472-1630, gnl|canFam2|chr37 (31670933-31671136) | |
| 1472-1630, gnl|danRer3|chr15 (45587208-45587391) | |
| 1472-1630, gnl|dasNov1|scaffold_149144 (3975-3772) | |
| 1472-1630, gnl|echTel1|scaffold_291943 (4028-4225) | |
| 1472-1630, gnl|fr1|chrUn (120453674-120453868) | |
| 1472-1630, gnl|galGal2|chr9 (5651407-5651196) | |
| 1472-1630, gnl|hg17|chr2 (223290148-223290350) | |
| 1472-1630, gnl|Hg17|chr2 (223290308-223290151) | |
| 1472-1630, gnl|loxAfr1|scaffold_23989 (8654-8848) | |
| 1472-1630, gnl|mm7|chr1 (78669059-78669263) | |
| 1472-1630, gnl|Mm7|chr1 (78669220-78669062) | |
| 1472-1630, gnl|monDom2|scaffold_28 (3357666-3357884) | |
| 1472-1630, gnl|oryCun1|scaffold_122917 (6642-6445) | |
| 1472-1630, gnl|panTro1|chr13 (113874632-113874834) | |
| 1472-1630, gnl|rheMac2|chr12 (86464614-86464816) | |
| 1472-1630, gnl|rn3|chr9 (78007166-78007370) | |
| 1472-1630, gnl|tetNig1|chr16 (7184338-7184148) | |
| 1472-1630, gnl|xenTro1|scaffold_209 (989631-989831) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| fcc (0.39557) | |
| csp (0.322373) | |
| fce (0.271592) | |
| spc (0.226732) | |
| nep (0.183925) | |
| ton (0.1755) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nco (0.161734) | |
| lun (0.150489) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.39557) | |
| csp (0.322373) | |
| fce (0.271592) | |
| spc (0.226732) | |
| nep (0.183925) | |
| ton (0.1755) | |
| sin (0.174948) | |
| eye (0.170503) | |
| nco (0.161734) | |
| lun (0.150489) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| cty (0.10408) | |
| jej (0.0989218) | |
| ldo (0.0970026) |