Ss1.1-rnco1908b_e13.5
|
GTCCCTCTGCAGCCGGTTCTCTGTTAGTTGTTTGGCAGACCCAGGTCGAGCTCTGGCTCC
CGCGGAGCTGCGAGATGTCCTTCAGAGCTGCCTGGAGCTTGGTGCTGAGGAAGGGGGAAG
TTGGAATGCGAGGGATCCACAGCCCAGGAGCCACCGCCCACGGCAAGGAGAAGATGCCAC
CATACACCAGCTACCACGCGCAGCGCTCCTACCCCATGCCCGACGAGCCCTTCTGCACGG
AGCTCAGCGCTGAGCAATGGGCCCTGAAGGAGAAGGAGAAGGGCAGCTGGACGCAGCTGA
GCCACGCCGAGAAGGTGGCCTTGTACCGGCTCCAGTACCATGAGACCTTCGCGGAGATGA
ACCGTCGCTCCAATGAATGGAAGACAGTCATGGGCTGTGTCTTCTTCTTCTTTGGATTCA
CAGGTCTGATGATTTGGTGGCAGCATGTCTACGTCTTCCCTAAGAAGCCCATCACCCTGA
CGGATGAGTGGAAGGCCCAGCAGCTCCAGCGCATCCTGGACATGAAGGGCAACCCTGTGC
AAGGCCTGGCCTCCCGGTGGGACTACGAGAGGAAGGAATGGAAGAAGTGACCTGGGTGGG
GTTCCAGCTGATCCCCTTGTAGCCCCAACCTGGCCCGCAGCCTGTGGCGGCTCCTCCCCT
TCCCTTAACTGCAATAAAGCTGGCCTGTTCTCATCT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTCCCTCTGCAGCCGGTTCTCTGTTAGTTGTTTGGCAGACCCAGGTCGAGCTCTGGCTCC
CGCGGAGCTGCGAGATGTCCTTCAGAGCTGCCTGGAGCTTGGTGCTGAGGAAGGGGGAAG
TTGGAATGCGAGGGATCCACAGCCCAGGAGCCACCGCCCACGGCAAGGAGAAGATGCCAC
CATACACCAGCTACCACGCGCAGCGCTCCTACCCCATGCCCGACGAGCCCTTCTGCACGG
AGCTCAGCGCTGAGCAATGGGCCCTGAAGGAGAAGGAGAAGGGCAGCTGGACGCAGCTGA
GCCACGCCGAGAAGGTGGCCTTGTACCGGCTCCAGTACCATGAGACCTTCGCGGAGATGA
ACCGTCGCTCCAATGAATGGAAGACAGTCATGGGCTGTGTCTTCTTCTTCTTTGGATTCA
CAGGTCTGATGATTTGGTGGCAGCATGTCTACGTCTTCCCTAAGAAGCCCATCACCCTGA
CGGATGAGTGGAAGGCCCAGCAGCTCCAGCGCATCCTGGACATGAAGGGCAACCCTGTGC
AAGGCCTGGCCTCCCGGTGGGACTACGAGAGGAAGGAATGGAAGAAGTGACCTGGGTGGG
GTTCCAGCTGATCCCCTTGTAGCCCCAACCTGGCCCGCAGCCTGTGGCGGCTCCTCCCCT
TCCCTTAACTGCAATAAAGCTGGCCTGTTCTCATCT
|
|
gi|56204047|emb|CAI23028.1| |
Protein identifier
|
gi|56204047|emb|CAI23028.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
151-320, gnl|bosTau2|chr13 (43355881-43356050) |
|
151-320, gnl|Hg17|chr20 (29691391-29691560) |
|
151-320, gnl|Mm7|chr2 (152497861-152498030) |
| |
|
322-451, gnl|bosTau2|chr13 (43356861-43356990) |
|
322-451, gnl|canFam2|chr24 (24095309-24095453) |
|
322-451, gnl|danRer3|chr5 (41052343-41052204) |
|
322-451, gnl|dasNov1|scaffold_64875 (698-554) |
|
322-451, gnl|echTel1|scaffold_300066 (10342-10486) |
|
322-451, gnl|hg17|chr20 (29694864-29695008) |
|
322-451, gnl|Hg17|chr20 (29694868-29694997) |
|
322-451, gnl|loxAfr1|scaffold_102391 (3451-3595) |
|
322-451, gnl|mm7|chr2 (152501491-152501635) |
|
322-451, gnl|Mm7|chr2 (152501495-152501624) |
|
322-451, gnl|oryCun1|scaffold_150525 (14370-14494) |
|
322-451, gnl|panTro1|chr21 (31393501-31393645) |
|
322-451, gnl|rheMac2|chr10 (32937588-32937444) |
|
322-451, gnl|rn3|chr3 (143015567-143015714) |
|
322-451, gnl|tetNig1|chrUn_random (143545365-143545223) |
| |
|
453-696, gnl|bosTau2|chr13 (43358243-43358480) |
|
453-696, gnl|Hg17|chr20 (29696231-29696483) |
|
453-696, gnl|Mm7|chr2 (152505601-152505882) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
151-320, gnl|bosTau2|chr13 (43355881-43356050) |
|
151-320, gnl|Hg17|chr20 (29691391-29691560) |
|
151-320, gnl|Mm7|chr2 (152497861-152498030) |
| |
|
322-451, gnl|bosTau2|chr13 (43356861-43356990) |
|
322-451, gnl|canFam2|chr24 (24095309-24095453) |
|
322-451, gnl|danRer3|chr5 (41052343-41052204) |
|
322-451, gnl|dasNov1|scaffold_64875 (698-554) |
|
322-451, gnl|echTel1|scaffold_300066 (10342-10486) |
|
322-451, gnl|hg17|chr20 (29694864-29695008) |
|
322-451, gnl|Hg17|chr20 (29694868-29694997) |
|
322-451, gnl|loxAfr1|scaffold_102391 (3451-3595) |
|
322-451, gnl|mm7|chr2 (152501491-152501635) |
|
322-451, gnl|Mm7|chr2 (152501495-152501624) |
|
322-451, gnl|oryCun1|scaffold_150525 (14370-14494) |
|
322-451, gnl|panTro1|chr21 (31393501-31393645) |
|
322-451, gnl|rheMac2|chr10 (32937588-32937444) |
|
322-451, gnl|rn3|chr3 (143015567-143015714) |
|
322-451, gnl|tetNig1|chrUn_random (143545365-143545223) |
| |
|
453-696, gnl|bosTau2|chr13 (43358243-43358480) |
|
453-696, gnl|Hg17|chr20 (29696231-29696483) |
|
453-696, gnl|Mm7|chr2 (152505601-152505882) |
|
eep (0.367692) |
|
cga (0.279096) |
|
cov (0.264306) |
|
eru (0.240096) |
|
ebs (0.236602) |
|
mas (0.210305) |
|
nep (0.183925) |
|
nco (0.161734) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
pla (0.133672) |
|
med (0.116252) |
|
jca (0.11396) |
|
eep (0.367692) |
|
cga (0.279096) |
|
cov (0.264306) |
|
eru (0.240096) |
|
ebs (0.236602) |
|
mas (0.210305) |
|
nep (0.183925) |
|
nco (0.161734) |
|
cag (0.151194) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
pla (0.133672) |
|
med (0.116252) |
|
jca (0.11396) |
