Non-Coding RNA Search

Ss1.1-rnco1908b_g14.5

Sequence:


               
               CCCCGTTGGAACCCCTGCTTCCCTCTGGGAATTTGAGATACTGCCTTGTGATTTTGAATC
AGCCTTTGGACAAGTGTTTTCGTCATCTTTGGCACAAAGCTCTTTTTAAAGCCTGTGCGG
ATGGAGGTGCCAACCGCTTATACGACATCACGGAAGGAGAGAGGGAGAGCTTTTTGCCTG
AATTCGTCAATGGCGACTTTGATTCTATTAGGCCTGATGTGAGAGAATACTACGCTACTA
AGGGATGTGAATTTATTTCAACTCCTGATCAAGACCATACTGACTTTACCAAGTGCCTTG
AAGTGCTCCAAAAGAAGCTAGAAGAAAAAGACCTACAGGTAGATATGATTGTGACATTGG
GAGGACTTGCTGGGCGTTTTGACCAGATTATGGCATCTGTGAGCACCTTGTTCCAAGCAA
CTCGTATCACGCCTTTGCCAATTATAATAATCCAAGAGGAATCTCTCATCTACCTGCTCC
AACCAGGAAAACACAAATTGCATGTAGATACTGGAATGGAAGGTGATTGGTGCGGCCTTA
TTCCTGTTGGAGAGCCATGCAGTCGGGTTACAACAACAGGCCTGAAGTGGAACCTCACAA
ATCACACGCTTAGTTTTGGAACACTGGTCAGTACTTCCAATACCTATGATGGATCTGGTG
TTGTGACTGTGGAAACGGACCGTCCCCTCCTCTGGACCATGGCTATCAAAAACTGACCCA
CTGACTAACACCCAAAGCTGTGCCTCTGACTTACCTCATTTGCCAACAACTTCTTGCTCA
ACAAGAACAGTTTACCTTGGGTGGCAGGAATCTAAACCTGTCACCGGGAAGCCCAGTAGT
TTTAAAGGTGTTAATGTTTGGATGATCCATGTAACATACATGACAGATCTCAATTTCACA
GTGGGGAAGAAATCATTATTGGTTAAGAAAATAAAGTAGCTCTGTTATATTCAGTTAGAA
AACTAATGTGGATCATTCCACTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCGTTGGAACCCCTGCTTCCCTCTGGGAATTTGAGATACTGCCTTGTGATTTTGAATC
AGCCTTTGGACAAGTGTTTTCGTCATCTTTGGCACAAAGCTCTTTTTAAAGCCTGTGCGG
ATGGAGGTGCCAACCGCTTATACGACATCACGGAAGGAGAGAGGGAGAGCTTTTTGCCTG
AATTCGTCAATGGCGACTTTGATTCTATTAGGCCTGATGTGAGAGAATACTACGCTACTA
AGGGATGTGAATTTATTTCAACTCCTGATCAAGACCATACTGACTTTACCAAGTGCCTTG
AAGTGCTCCAAAAGAAGCTAGAAGAAAAAGACCTACAGGTAGATATGATTGTGACATTGG
GAGGACTTGCTGGGCGTTTTGACCAGATTATGGCATCTGTGAGCACCTTGTTCCAAGCAA
CTCGTATCACGCCTTTGCCAATTATAATAATCCAAGAGGAATCTCTCATCTACCTGCTCC
AACCAGGAAAACACAAATTGCATGTAGATACTGGAATGGAAGGTGATTGGTGCGGCCTTA
TTCCTGTTGGAGAGCCATGCAGTCGGGTTACAACAACAGGCCTGAAGTGGAACCTCACAA
ATCACACGCTTAGTTTTGGAACACTGGTCAGTACTTCCAATACCTATGATGGATCTGGTG
TTGTGACTGTGGAAACGGACCGTCCCCTCCTCTGGACCATGGCTATCAAAAACTGACCCA
CTGACTAACACCCAAAGCTGTGCCTCTGACTTACCTCATTTGCCAACAACTTCTTGCTCA
ACAAGAACAGTTTACCTTGGGTGGCAGGAATCTAAACCTGTCACCGGGAAGCCCAGTAGT
TTTAAAGGTGTTAATGTTTGGATGATCCATGTAACATACATGACAGATCTCAATTTCACA
GTGGGGAAGAAATCATTATTGGTTAAGAAAATAAAGTAGCTCTGTTATATTCAGTTAGAA
AACTAATGTGGATCATTCCACTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|59858037|gb|AAX08853.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|59858037|gb|AAX08853.1|

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               336-489, gnl|bosTau2|chr4 (60831634-60831481)
               

               
               336-489, gnl|canFam2|chr16 (8433062-8432893)
               

               
               336-489, gnl|dasNov1|scaffold_167880 (1678-1839)
               

               
               336-489, gnl|galGal2|chr2 (52698122-52698284)
               

               
               336-489, gnl|hg17|chr7 (143726144-143726313)
               

               
               336-489, gnl|Hg17|chr7 (143726313-143726160)
               

               
               336-489, gnl|loxAfr1|scaffold_5446 (5649-5789)
               

               
               336-489, gnl|mm7|chr6 (43510517-43510684)
               

               
               336-489, gnl|Mm7|chr6 (43510684-43510531)
               

               
               336-489, gnl|monDom2|scaffold_7 (3252925-3253099)
               

               
               336-489, gnl|panTro1|chr6 (146348965-146349134)
               

               
               336-489, gnl|rheMac2|chr3 (181900475-181900644)
               

               
               336-489, gnl|rn3|chr4 (71528772-71528939)
               

               
               336-489, gnl|xenTro1|scaffold_616 (699378-699542)
               


               
               598-899, gnl|bosTau2|chr4 (61706519-61706215)
               

               
               598-899, gnl|Hg17|chr7 (143588404-143588101)
               

               
               598-899, gnl|Mm7|chr6 (43388433-43388044)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               336-489, gnl|bosTau2|chr4 (60831634-60831481)
               

               
               336-489, gnl|canFam2|chr16 (8433062-8432893)
               

               
               336-489, gnl|dasNov1|scaffold_167880 (1678-1839)
               

               
               336-489, gnl|galGal2|chr2 (52698122-52698284)
               

               
               336-489, gnl|hg17|chr7 (143726144-143726313)
               

               
               336-489, gnl|Hg17|chr7 (143726313-143726160)
               

               
               336-489, gnl|loxAfr1|scaffold_5446 (5649-5789)
               

               
               336-489, gnl|mm7|chr6 (43510517-43510684)
               

               
               336-489, gnl|Mm7|chr6 (43510684-43510531)
               

               
               336-489, gnl|monDom2|scaffold_7 (3252925-3253099)
               

               
               336-489, gnl|panTro1|chr6 (146348965-146349134)
               

               
               336-489, gnl|rheMac2|chr3 (181900475-181900644)
               

               
               336-489, gnl|rn3|chr4 (71528772-71528939)
               

               
               336-489, gnl|xenTro1|scaffold_616 (699378-699542)
               


               
               598-899, gnl|bosTau2|chr4 (61706519-61706215)
               

               
               598-899, gnl|Hg17|chr7 (143588404-143588101)
               

               
               598-899, gnl|Mm7|chr6 (43388433-43388044)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               jej (0.0989218)

	336-489, gnl\|bosTau2\|chr4 (60831634-60831481)
	336-489, gnl\|canFam2\|chr16 (8433062-8432893)
	336-489, gnl\|dasNov1\|scaffold_167880 (1678-1839)
	336-489, gnl\|galGal2\|chr2 (52698122-52698284)
	336-489, gnl\|hg17\|chr7 (143726144-143726313)
	336-489, gnl\|Hg17\|chr7 (143726313-143726160)
	336-489, gnl\|loxAfr1\|scaffold_5446 (5649-5789)
	336-489, gnl\|mm7\|chr6 (43510517-43510684)
	336-489, gnl\|Mm7\|chr6 (43510684-43510531)
	336-489, gnl\|monDom2\|scaffold_7 (3252925-3253099)
	336-489, gnl\|panTro1\|chr6 (146348965-146349134)
	336-489, gnl\|rheMac2\|chr3 (181900475-181900644)
	336-489, gnl\|rn3\|chr4 (71528772-71528939)
	336-489, gnl\|xenTro1\|scaffold_616 (699378-699542)

	598-899, gnl\|bosTau2\|chr4 (61706519-61706215)
	598-899, gnl\|Hg17\|chr7 (143588404-143588101)
	598-899, gnl\|Mm7\|chr6 (43388433-43388044)