Ss1.1-rnco1910b_o22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTGGCGTGCTCGCCTCTCACCCCAACAGTACCGATGCCCACATCATCAACCTCTCCCTC ACCTTCCACGGTCAAGAGCTGCTCAGTGACACCAAACTGGAATTAAACTCAGGCCGTCGC TATGGCCTCATTGGCTTAAACGGAATTGGAAAGTCCATGCTGCTCTCTGCTATTGGGAAG CGCGAAGTGCCCATCCCCGAGCACATCGACATCTACCACCTGACCCGGGAGATGCCCCCT AGCGACAAGACGCCCTTGCAGTGTGTGATGGAGGTCGACACGGAGCGGGCCATGCTGGAG AGGGAGGCTGAGCGGCTGGCTCACGAGGACGCCGAGTGTGAGAAGCTCTTAGAGCTCTAC GAGCGCCTGGAGGAGCTGGATGCAGACAAGGCGGAGATGAGGGCCTCACGGATCTTGCAC GGACTGGGATTCACACCTGCCATGCAACGCAAGAAGCTCAAAGACTTCAGTGGGGGCTGG AGGATGCGGGTTGCCCTTGCCAGAGCCCTCTTCATCCGGCCCTTCATGCTGCTCCTGGAC GAGCCCACCAACCACCTGGACCTCGATGCTTGTGTGTGGTTGGAGGAGGAGCTAAAGACT TTTAAGCGGATCCTGGTCCTCGTCTCCCACTCCCAGGACTTTCTGAATGGCGTCTGTACC AACATCATTCACATGCACAACAAGAAACTCAAGTATTACACGGGTAATTACGATCAGTAT GTGAAGACACGGCTGGAGCTGGAAGAGAATCAGATGAAGCGGTTTCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTGGCGTGCTCGCCTCTCACCCCAACAGTACCGATGCCCACATCATCAACCTCTCCCTC ACCTTCCACGGTCAAGAGCTGCTCAGTGACACCAAACTGGAATTAAACTCAGGCCGTCGC TATGGCCTCATTGGCTTAAACGGAATTGGAAAGTCCATGCTGCTCTCTGCTATTGGGAAG CGCGAAGTGCCCATCCCCGAGCACATCGACATCTACCACCTGACCCGGGAGATGCCCCCT AGCGACAAGACGCCCTTGCAGTGTGTGATGGAGGTCGACACGGAGCGGGCCATGCTGGAG AGGGAGGCTGAGCGGCTGGCTCACGAGGACGCCGAGTGTGAGAAGCTCTTAGAGCTCTAC GAGCGCCTGGAGGAGCTGGATGCAGACAAGGCGGAGATGAGGGCCTCACGGATCTTGCAC GGACTGGGATTCACACCTGCCATGCAACGCAAGAAGCTCAAAGACTTCAGTGGGGGCTGG AGGATGCGGGTTGCCCTTGCCAGAGCCCTCTTCATCCGGCCCTTCATGCTGCTCCTGGAC GAGCCCACCAACCACCTGGACCTCGATGCTTGTGTGTGGTTGGAGGAGGAGCTAAAGACT TTTAAGCGGATCCTGGTCCTCGTCTCCCACTCCCAGGACTTTCTGAATGGCGTCTGTACC AACATCATTCACATGCACAACAAGAAACTCAAGTATTACACGGGTAATTACGATCAGTAT GTGAAGACACGGCTGGAGCTGGAAGAGAATCAGATGAAGCGGTTTCAC |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 148-331, gnl|bosTau2|chr4 (64376761-64376944) | |
| 148-331, gnl|canFam2|chr16 (18209313-18209131) | |
| 148-331, gnl|canFam2|chr16 (18209123-18209349) | |
| 148-331, gnl|danRer3|chr2 (26288061-26288243) | |
| 148-331, gnl|danRer3|chr7 (36103639-36103450) | |
| 148-331, gnl|dasNov1|scaffold_74928 (7885-8070) | |
| 148-331, gnl|dasNov1|scaffold_74928 (8070-7841) | |
| 148-331, gnl|echTel1|scaffold_203334 (8305-8124) | |
| 148-331, gnl|echTel1|scaffold_301601 (81867-82093) | |
| 148-331, gnl|fr1|chrUn (3415240-3415422) | |
| 148-331, gnl|fr1|chrUn (3415430-3415214) | |
| 148-331, gnl|galGal2|chrUn (125728835-125728653) | |
| 148-331, gnl|galGal2|chrUn (125728645-125728854) | |
| 148-331, gnl|hg17|chr3 (88449359-88449541) | |
| 148-331, gnl|hg17|chr7 (150358660-150358875) | |
| 148-331, gnl|Hg17|chr7 (150358849-150358666) | |
| 148-331, gnl|loxAfr1|scaffold_19096 (11439-11257) | |
| 148-331, gnl|loxAfr1|scaffold_19096 (11249-11481) | |
| 148-331, gnl|mm7|chr5 (23614270-23614089) | |
| 148-331, gnl|mm7|chr5 (23614088-23614294) | |
| 148-331, gnl|Mm7|chr5 (23614270-23614088) | |
| 148-331, gnl|monDom2|scaffold_7 (11417016-11416834) | |
| 148-331, gnl|monDom2|scaffold_7 (11416826-11417056) | |
| 148-331, gnl|oryCun1|scaffold_208276 (90035-89854) | |
| 148-331, gnl|oryCun1|scaffold_208276 (89846-90060) | |
| 148-331, gnl|panTro1|chr2 (90830951-90831133) | |
| 148-331, gnl|panTro1|chr6_random (16566089-16565874) | |
| 148-331, gnl|rheMac2|chr2 (12553880-12554062) | |
| 148-331, gnl|rheMac2|chr3 (188172975-188173190) | |
| 148-331, gnl|rn3|chr4 (140040817-140040635) | |
| 148-331, gnl|rn3|chr4 (5978297-5978084) | |
| 148-331, gnl|tetNig1|chr6 (4863990-4864172) | |
| 148-331, gnl|tetNig1|chr6 (4864180-4863984) | |
| 148-331, gnl|xenTro1|scaffold_1115 (126203-126021) | |
| 148-331, gnl|xenTro1|scaffold_1115 (126013-126224) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 148-331, gnl|bosTau2|chr4 (64376761-64376944) | |
| 148-331, gnl|canFam2|chr16 (18209313-18209131) | |
| 148-331, gnl|canFam2|chr16 (18209123-18209349) | |
| 148-331, gnl|danRer3|chr2 (26288061-26288243) | |
| 148-331, gnl|danRer3|chr7 (36103639-36103450) | |
| 148-331, gnl|dasNov1|scaffold_74928 (7885-8070) | |
| 148-331, gnl|dasNov1|scaffold_74928 (8070-7841) | |
| 148-331, gnl|echTel1|scaffold_203334 (8305-8124) | |
| 148-331, gnl|echTel1|scaffold_301601 (81867-82093) | |
| 148-331, gnl|fr1|chrUn (3415240-3415422) | |
| 148-331, gnl|fr1|chrUn (3415430-3415214) | |
| 148-331, gnl|galGal2|chrUn (125728835-125728653) | |
| 148-331, gnl|galGal2|chrUn (125728645-125728854) | |
| 148-331, gnl|hg17|chr3 (88449359-88449541) | |
| 148-331, gnl|hg17|chr7 (150358660-150358875) | |
| 148-331, gnl|Hg17|chr7 (150358849-150358666) | |
| 148-331, gnl|loxAfr1|scaffold_19096 (11439-11257) | |
| 148-331, gnl|loxAfr1|scaffold_19096 (11249-11481) | |
| 148-331, gnl|mm7|chr5 (23614270-23614089) | |
| 148-331, gnl|mm7|chr5 (23614088-23614294) | |
| 148-331, gnl|Mm7|chr5 (23614270-23614088) | |
| 148-331, gnl|monDom2|scaffold_7 (11417016-11416834) | |
| 148-331, gnl|monDom2|scaffold_7 (11416826-11417056) | |
| 148-331, gnl|oryCun1|scaffold_208276 (90035-89854) | |
| 148-331, gnl|oryCun1|scaffold_208276 (89846-90060) | |
| 148-331, gnl|panTro1|chr2 (90830951-90831133) | |
| 148-331, gnl|panTro1|chr6_random (16566089-16565874) | |
| 148-331, gnl|rheMac2|chr2 (12553880-12554062) | |
| 148-331, gnl|rheMac2|chr3 (188172975-188173190) | |
| 148-331, gnl|rn3|chr4 (140040817-140040635) | |
| 148-331, gnl|rn3|chr4 (5978297-5978084) | |
| 148-331, gnl|tetNig1|chr6 (4863990-4864172) | |
| 148-331, gnl|tetNig1|chr6 (4864180-4863984) | |
| 148-331, gnl|xenTro1|scaffold_1115 (126203-126021) | |
| 148-331, gnl|xenTro1|scaffold_1115 (126013-126224) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cga (0.279096) | |
| fty (0.17584) | |
| ill (0.175593) | |
| nje (0.16592) | |
| nco (0.161734) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| fty (0.17584) | |
| ill (0.175593) | |
| nje (0.16592) | |
| nco (0.161734) | |
| eep (0.122564) | |
| cly (0.120642) | |
| eru (0.120048) |