Non-Coding RNA Search

Ss1.1-rnco1911b_e20.5

Sequence:


               
               GGACAAAAATTTTAAGCAGGAGAACCCTTTAGTAGTTTGAAAATGCTAATAAGAGAAGAG
GAGGCTATATATAACCTAACTGTTCATTCTGAGCACTCCATCACTACTTACAGGAACTGC
CAGTGACAAGGATAGTGTAAGTGACTCCACTACTTACAGGAACTACCAGTGACAAAGATA
GTGTATTAGTTGGCCATCAGTCTTGCACTAAGCACCAGAAGACTTGAAAATCTATAAAAC
AAAACAAAGGAAACATTTAACTAGAACAAGTCAAAAGGAATATTAAACTGATAAAACCAG
GACTCTGATGCTAAAGTTTTTATCAGTGGAAGTGTACATCTTGTATCCTTCCATATTAAC
TTGTTTTCCACTATATTTAAAATCTTTTTTTTTTTGTATTTTCATAGAGTTTTGCTAGAT
CTAGAGCTCTACTCAGTACCTCTACAAAAACAGTATACACTTCTCAAATACTGGTCTTGA
GAATCCCCCCAAGTAGAATCATGTGCAACTCGGCAAGAGTTTTTTGCTCAAAACATTTAC
TGACTGAAGCAAATTTCCTTTCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACAAAAATTTTAAGCAGGAGAACCCTTTAGTAGTTTGAAAATGCTAATAAGAGAAGAG
GAGGCTATATATAACCTAACTGTTCATTCTGAGCACTCCATCACTACTTACAGGAACTGC
CAGTGACAAGGATAGTGTAAGTGACTCCACTACTTACAGGAACTACCAGTGACAAAGATA
GTGTATTAGTTGGCCATCAGTCTTGCACTAAGCACCAGAAGACTTGAAAATCTATAAAAC
AAAACAAAGGAAACATTTAACTAGAACAAGTCAAAAGGAATATTAAACTGATAAAACCAG
GACTCTGATGCTAAAGTTTTTATCAGTGGAAGTGTACATCTTGTATCCTTCCATATTAAC
TTGTTTTCCACTATATTTAAAATCTTTTTTTTTTTGTATTTTCATAGAGTTTTGCTAGAT
CTAGAGCTCTACTCAGTACCTCTACAAAAACAGTATACACTTCTCAAATACTGGTCTTGA
GAATCCCCCCAAGTAGAATCATGTGCAACTCGGCAAGAGTTTTTTGCTCAAAACATTTAC
TGACTGAAGCAAATTTCCTTTCTG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               143-563, gnl|bosTau2|chr16 (41812976-41813403)
               

               
               143-563, gnl|Hg17|chr1 (170486444-170486877)
               

               
               143-563, gnl|Mm7|chr1 (161052310-161051433)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               143-563, gnl|bosTau2|chr16 (41812976-41813403)
               

               
               143-563, gnl|Hg17|chr1 (170486444-170486877)
               

               
               143-563, gnl|Mm7|chr1 (161052310-161051433)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               nco (0.161734)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               nco (0.161734)

	143-563, gnl\|bosTau2\|chr16 (41812976-41813403)
	143-563, gnl\|Hg17\|chr1 (170486444-170486877)
	143-563, gnl\|Mm7\|chr1 (161052310-161051433)