Ss1.1-rnco1912b_p3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAGGGCTAGTCCCGCTGTTGTGGATGTGCCTCTCCCACCTTCAAAGCCTGGTTCCAGG CTCTGGTAGGGAGTGTGTTCTCAGCCAGATAAACTGCTGATGGGAAAGAAGGGGATTGGT AGACCACCTGGTGCCCGGGAGGAAGCAGGGCCAAGCCCAGGATCTTCCCAGTGGATGGGA ATAAGTGTCATCCCGCTTGAAGTCGTGTGAACCAAAGCCTCAGGGGCACAGCTGCAGTCA GCTGGCCCCAGCCCTGCTTCAGGGCCAAGACCATGCCTGGGTACCCAGGATGGGGGAGGT AAAAACTCCCTCCCAGCCCATGGGCACCCGCCCCCATCAGTCCGGCTGCTGGCCTGGACT CCAGGGGTCTTGCACTGCTGAGATGCTCTGGACAACATCCAATTCCTTCCAAGGCCAGAG TGTTCTCCCTTGGATCCTCCTAGGGTCCCCCTATGTCTCTGGCGGCCAAGGGCTGATGTA GCCGAGGGTGTCCAGGACAGAGGGGTGGGCAGGGGAAGAGGATGCTTAAGGAAACCAGTA AGTCAATGGAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAGGGCTAGTCCCGCTGTTGTGGATGTGCCTCTCCCACCTTCAAAGCCTGGTTCCAGG CTCTGGTAGGGAGTGTGTTCTCAGCCAGATAAACTGCTGATGGGAAAGAAGGGGATTGGT AGACCACCTGGTGCCCGGGAGGAAGCAGGGCCAAGCCCAGGATCTTCCCAGTGGATGGGA ATAAGTGTCATCCCGCTTGAAGTCGTGTGAACCAAAGCCTCAGGGGCACAGCTGCAGTCA GCTGGCCCCAGCCCTGCTTCAGGGCCAAGACCATGCCTGGGTACCCAGGATGGGGGAGGT AAAAACTCCCTCCCAGCCCATGGGCACCCGCCCCCATCAGTCCGGCTGCTGGCCTGGACT CCAGGGGTCTTGCACTGCTGAGATGCTCTGGACAACATCCAATTCCTTCCAAGGCCAGAG TGTTCTCCCTTGGATCCTCCTAGGGTCCCCCTATGTCTCTGGCGGCCAAGGGCTGATGTA GCCGAGGGTGTCCAGGACAGAGGGGTGGGCAGGGGAAGAGGATGCTTAAGGAAACCAGTA AGTCAATGGAGT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 79-305, - strand, RNAz p=0.999041 | |
| 308-552, + strand, RNAz p=0.991019 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 79-305, - strand, RNAz p=0.999041 | |
| 308-552, + strand, RNAz p=0.991019 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_020807, + |
| Aligned organism(s): 5 entry(ies) | More info |
| Aligned organism(s): 5 entry(ies) | Help | Less info |
| 3-305, gnl|bosTau2|chr18 (22842556-22842246) | |
| 3-305, gnl|Hg17|chr16 (56587181-56586899) | |
| 3-305, gnl|Mm7|chr8 (93916200-93915934) | |
| 308-552, gnl|bosTau2|chr18 (22842215-22841970) | |
| 308-552, gnl|Hg17|chr16 (56586877-56586646) |
| Aligned organism(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-305, gnl|bosTau2|chr18 (22842556-22842246) | |
| 3-305, gnl|Hg17|chr16 (56587181-56586899) | |
| 3-305, gnl|Mm7|chr8 (93916200-93915934) | |
| 308-552, gnl|bosTau2|chr18 (22842215-22841970) | |
| 308-552, gnl|Hg17|chr16 (56586877-56586646) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| ecc (0.115035) |