Non-Coding RNA Search

Ss1.1-rnco1913b_c6.5

Sequence:


               
               TGCTGAGATCAGATATGGCAGTCCCTTCCCAGGCGGTGCCTGGTTTGGGAGCTGACACTT
AAACCAAATGGCTAGACTCCAGCGTGATCAATGCTACATGGAAAATGCATGTGAAACACA
GGAGGCGGTCATAACGGTGAATGCAGAGAGCTCTATGCCAGAGCTGTTCTCATCGTTGTA
AACACTGTAACTCCTTTAATACCGCCCTCCCCCCTGCCCGCCAAGCCCCATGCGCCCGTG
CTATGACCGCCCCATTTCATAGGCAAAAGAAACTGAGGCGGAGAGAAGTAGAGGTGGCCT
CGCCCAAGGTCCCCCGGTTCATAAACGAGCTGAATGTGGATCCAGCATCTGGCTTCGGAG
TCCCTCCTCCTAAACCTCATGCCAGGGTGGTGGGGGGAAAGGCCGGGCTCCCAGACTGCA
TTGCGGAGAATCGATGGGATTTTGACACCCTGATGGGGGCGGGCATCCCAGGAAGTGAGA
ATAGGAGGTCCAGGCGTGGGGGGGTGTGTGTGGGATTGGTGTGCATTTCCAGCGCCTCGA
GGACAGAGGTGGGGGTGGCACTCAGGAGCCTGGCCCGTGAGCAGTTCCCTTCTGCTGTCA
TCCCCAGGGAGGAGGCAGGGAGAGTTTCCCAGGCAGGGGTGGGGGTGAGCCATCGCCGTC
CTTTCCCCCGTGTTTTGGAGTTAGTCTTTGTCTCCTGTTTATCCTTCTTCCCAGAGTCCC
TTCTGCCCTCGGGGTCATTACAGAGAATTCTGTCCCACATCCATTTAAGTTTCAAGCAGT
GAAGCATCTCAAACCTTTCTGAGAAAATTATTCCGCAGCCCCGTTGTCCAGGAAACTTCT
GTTCTGCAGCCTCATTTTTTCATTCCTTTTTAAAATCTCTCCATTCCTTCCTTGTGCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGAGATCAGATATGGCAGTCCCTTCCCAGGCGGTGCCTGGTTTGGGAGCTGACACTT
AAACCAAATGGCTAGACTCCAGCGTGATCAATGCTACATGGAAAATGCATGTGAAACACA
GGAGGCGGTCATAACGGTGAATGCAGAGAGCTCTATGCCAGAGCTGTTCTCATCGTTGTA
AACACTGTAACTCCTTTAATACCGCCCTCCCCCCTGCCCGCCAAGCCCCATGCGCCCGTG
CTATGACCGCCCCATTTCATAGGCAAAAGAAACTGAGGCGGAGAGAAGTAGAGGTGGCCT
CGCCCAAGGTCCCCCGGTTCATAAACGAGCTGAATGTGGATCCAGCATCTGGCTTCGGAG
TCCCTCCTCCTAAACCTCATGCCAGGGTGGTGGGGGGAAAGGCCGGGCTCCCAGACTGCA
TTGCGGAGAATCGATGGGATTTTGACACCCTGATGGGGGCGGGCATCCCAGGAAGTGAGA
ATAGGAGGTCCAGGCGTGGGGGGGTGTGTGTGGGATTGGTGTGCATTTCCAGCGCCTCGA
GGACAGAGGTGGGGGTGGCACTCAGGAGCCTGGCCCGTGAGCAGTTCCCTTCTGCTGTCA
TCCCCAGGGAGGAGGCAGGGAGAGTTTCCCAGGCAGGGGTGGGGGTGAGCCATCGCCGTC
CTTTCCCCCGTGTTTTGGAGTTAGTCTTTGTCTCCTGTTTATCCTTCTTCCCAGAGTCCC
TTCTGCCCTCGGGGTCATTACAGAGAATTCTGTCCCACATCCATTTAAGTTTCAAGCAGT
GAAGCATCTCAAACCTTTCTGAGAAAATTATTCCGCAGCCCCGTTGTCCAGGAAACTTCT
GTTCTGCAGCCTCATTTTTTCATTCCTTTTTAAAATCTCTCCATTCCTTCCTTGTGCCCC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               5-330, gnl|bosTau2|chr13 (55112102-55111784)
               

               
               5-330, gnl|Hg17|chr20 (44416834-44416545)
               


               
               382-900, gnl|bosTau2|chr13 (55111711-55111184)
               

               
               382-900, gnl|Hg17|chr20 (44416450-44415868)
               

               
               382-900, gnl|Mm7|chr2 (165020828-165020333)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-330, gnl|bosTau2|chr13 (55112102-55111784)
               

               
               5-330, gnl|Hg17|chr20 (44416834-44416545)
               


               
               382-900, gnl|bosTau2|chr13 (55111711-55111184)
               

               
               382-900, gnl|Hg17|chr20 (44416450-44415868)
               

               
               382-900, gnl|Mm7|chr2 (165020828-165020333)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               ecc (0.115035)

	5-330, gnl\|bosTau2\|chr13 (55112102-55111784)
	5-330, gnl\|Hg17\|chr20 (44416834-44416545)

	382-900, gnl\|bosTau2\|chr13 (55111711-55111184)
	382-900, gnl\|Hg17\|chr20 (44416450-44415868)
	382-900, gnl\|Mm7\|chr2 (165020828-165020333)