Non-Coding RNA Search

Ss1.1-rnco1913b_f2.5

Sequence:


               
               CTTCTGTGCCGTTCTACCAGAAATTCAGAAACCTGAAAGGAAAATCCAGTTTAGAGAGAA
GGTACTATGGACTGCTATAACTCTCTTCATCTTCTTGGTGTGTTGCCAGGAACTTTAATG
GAGTTGGGTATCTCCCCAATTGTAACATCTGGTTTGATTATGCAGTTGTTAGCTGGAGCC
AAAATCATTGAAGTTGGAGATACACCCAAAGATAGAGCCCTATTCAACGGAGCCCAGAAA
CTGTTTGGGATGTACAGTTAAAGAGCCTTTTCCAAACAGACGAATTCGGTGTCTTTTGCT
CTGAGGCTGTGAGCATGTCCTCCTTTCCCGTTTCTGTCAGTGTTTGGGATGATCATCACC
ATCGGCCAGGCCATCGTGTATGTCATGACGGGCATGTATGGGGACCCTGCTGAGATGGGC
GCCGGGATCTGCCTCCTGATCATCATTCAGGTAAGAAGTGCAGTCGCACATGTGCAGACA
ACAGCTGCATCCCTTCCTTTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTGTGCCGTTCTACCAGAAATTCAGAAACCTGAAAGGAAAATCCAGTTTAGAGAGAA
GGTACTATGGACTGCTATAACTCTCTTCATCTTCTTGGTGTGTTGCCAGGAACTTTAATG
GAGTTGGGTATCTCCCCAATTGTAACATCTGGTTTGATTATGCAGTTGTTAGCTGGAGCC
AAAATCATTGAAGTTGGAGATACACCCAAAGATAGAGCCCTATTCAACGGAGCCCAGAAA
CTGTTTGGGATGTACAGTTAAAGAGCCTTTTCCAAACAGACGAATTCGGTGTCTTTTGCT
CTGAGGCTGTGAGCATGTCCTCCTTTCCCGTTTCTGTCAGTGTTTGGGATGATCATCACC
ATCGGCCAGGCCATCGTGTATGTCATGACGGGCATGTATGGGGACCCTGCTGAGATGGGC
GCCGGGATCTGCCTCCTGATCATCATTCAGGTAAGAAGTGCAGTCGCACATGTGCAGACA
ACAGCTGCATCCCTTCCTTTGCTT

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               2-109, gnl|bosTau2|chr13 (32976175-32976282)
               

               
               2-109, gnl|canFam2|chr20 (5077647-5077582)
               

               
               2-109, gnl|danRer3|chr6 (25308290-25308225)
               

               
               2-109, gnl|dasNov1|scaffold_2961 (75257-75322)
               

               
               2-109, gnl|echTel1|scaffold_279833 (82940-83005)
               

               
               2-109, gnl|fr1|chrUn (57792865-57792930)
               

               
               2-109, gnl|hg17|chr7 (128300328-128300393)
               

               
               2-109, gnl|Hg17|chr7 (128300434-128300327)
               

               
               2-109, gnl|loxAfr1|scaffold_8280 (30287-30222)
               

               
               2-109, gnl|mm7|chr6 (88590598-88590663)
               

               
               2-109, gnl|oryCun1|scaffold_198424 (207780-207845)
               

               
               2-109, gnl|panTro1|chr6 (130693449-130693514)
               

               
               2-109, gnl|rheMac2|chr3 (166401472-166401536)
               

               
               2-109, gnl|rn3|chr4 (122853611-122853676)
               

               
               2-109, gnl|tetNig1|chr11 (1779705-1779640)
               

               
               2-109, gnl|xenTro1|scaffold_72 (779917-779871)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-109, gnl|bosTau2|chr13 (32976175-32976282)
               

               
               2-109, gnl|canFam2|chr20 (5077647-5077582)
               

               
               2-109, gnl|danRer3|chr6 (25308290-25308225)
               

               
               2-109, gnl|dasNov1|scaffold_2961 (75257-75322)
               

               
               2-109, gnl|echTel1|scaffold_279833 (82940-83005)
               

               
               2-109, gnl|fr1|chrUn (57792865-57792930)
               

               
               2-109, gnl|hg17|chr7 (128300328-128300393)
               

               
               2-109, gnl|Hg17|chr7 (128300434-128300327)
               

               
               2-109, gnl|loxAfr1|scaffold_8280 (30287-30222)
               

               
               2-109, gnl|mm7|chr6 (88590598-88590663)
               

               
               2-109, gnl|oryCun1|scaffold_198424 (207780-207845)
               

               
               2-109, gnl|panTro1|chr6 (130693449-130693514)
               

               
               2-109, gnl|rheMac2|chr3 (166401472-166401536)
               

               
               2-109, gnl|rn3|chr4 (122853611-122853676)
               

               
               2-109, gnl|tetNig1|chr11 (1779705-1779640)
               

               
               2-109, gnl|xenTro1|scaffold_72 (779917-779871)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nco (0.161734)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	2-109, gnl\|bosTau2\|chr13 (32976175-32976282)
	2-109, gnl\|canFam2\|chr20 (5077647-5077582)
	2-109, gnl\|danRer3\|chr6 (25308290-25308225)
	2-109, gnl\|dasNov1\|scaffold_2961 (75257-75322)
	2-109, gnl\|echTel1\|scaffold_279833 (82940-83005)
	2-109, gnl\|fr1\|chrUn (57792865-57792930)
	2-109, gnl\|hg17\|chr7 (128300328-128300393)
	2-109, gnl\|Hg17\|chr7 (128300434-128300327)
	2-109, gnl\|loxAfr1\|scaffold_8280 (30287-30222)
	2-109, gnl\|mm7\|chr6 (88590598-88590663)
	2-109, gnl\|oryCun1\|scaffold_198424 (207780-207845)
	2-109, gnl\|panTro1\|chr6 (130693449-130693514)
	2-109, gnl\|rheMac2\|chr3 (166401472-166401536)
	2-109, gnl\|rn3\|chr4 (122853611-122853676)
	2-109, gnl\|tetNig1\|chr11 (1779705-1779640)
	2-109, gnl\|xenTro1\|scaffold_72 (779917-779871)