Non-Coding RNA Search

Ss1.1-rnco1913b_h20.5

Sequence:


               
               CTGTGTAGGGCGCCCGGCCGCCGCCACCAGGACCTGTACCGGCGCCAAGGCCGCGGGCCT
TTGAGTGCAGCGTCTACGCTGGTGAATACCGCTTCCGCTCTCCGCGTGTGGCTGCGAGTC
GGGTTGCTCTGCTGTGTTCCATCTCCTTCTCCTAAAGATGCATCCTGACTTATCTCCACA
CTTGCACACTGAAGAATGCAACGTCTTGATTAACTTGCTTAAGGAATGTCACAAAAATCA
CAGCATTCTGAAGTTTTTTGGTCATTGCAATGATCTTGATCGGGAGATGAGAAAATGCTT
GAAAAATGAGTACATGGAGAAGAGGAACAAGAGCAGGGAGCATGGCAATGCCATGAGAAA
GAGACTTCTCAATCTTCCAGAGGAGTCTGAAAAATAGATCATAACGCCACTGGCTGCCTT
GGCTGAGAGAAGACCTAGAGACTCTTGTTGGCAGCTGAGGGAATCCTGTCTCACTTGGTC
TCCAGAATCCTTGGAGTGGAAAGTGCCCCGTGAGAAGCTGTGGAGAAGTACGGAAACCGA
GGACCTGGATCTAGAACATCTGAAGAGCGGTCGCGCCCTCTCCTCTCCCAGCACGTCCGG
CTTCTCACGTGTTTCTTCCCTTTGCCTATGGCCCGTTAACATCCAAGTAACTTACCTCCC
TCAATAAAAGCATTGAGTTTAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGTAGGGCGCCCGGCCGCCGCCACCAGGACCTGTACCGGCGCCAAGGCCGCGGGCCT
TTGAGTGCAGCGTCTACGCTGGTGAATACCGCTTCCGCTCTCCGCGTGTGGCTGCGAGTC
GGGTTGCTCTGCTGTGTTCCATCTCCTTCTCCTAAAGATGCATCCTGACTTATCTCCACA
CTTGCACACTGAAGAATGCAACGTCTTGATTAACTTGCTTAAGGAATGTCACAAAAATCA
CAGCATTCTGAAGTTTTTTGGTCATTGCAATGATCTTGATCGGGAGATGAGAAAATGCTT
GAAAAATGAGTACATGGAGAAGAGGAACAAGAGCAGGGAGCATGGCAATGCCATGAGAAA
GAGACTTCTCAATCTTCCAGAGGAGTCTGAAAAATAGATCATAACGCCACTGGCTGCCTT
GGCTGAGAGAAGACCTAGAGACTCTTGTTGGCAGCTGAGGGAATCCTGTCTCACTTGGTC
TCCAGAATCCTTGGAGTGGAAAGTGCCCCGTGAGAAGCTGTGGAGAAGTACGGAAACCGA
GGACCTGGATCTAGAACATCTGAAGAGCGGTCGCGCCCTCTCCTCTCCCAGCACGTCCGG
CTTCTCACGTGTTTCTTCCCTTTGCCTATGGCCCGTTAACATCCAAGTAACTTACCTCCC
TCAATAAAAGCATTGAGTTTAATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|9910184|ref|NP_064573.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9910184|ref|NP_064573.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               3-683, gnl|bosTau2|chr7 (50776342-50777028)
               

               
               3-683, gnl|Hg17|chr16 (32659167-32657852)
               


               
               28-372, gnl|bosTau2|chr10 (13290717-13290381)
               

               
               28-372, gnl|Hg17|chr16 (32659133-32658795)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-683, gnl|bosTau2|chr7 (50776342-50777028)
               

               
               3-683, gnl|Hg17|chr16 (32659167-32657852)
               


               
               28-372, gnl|bosTau2|chr10 (13290717-13290381)
               

               
               28-372, gnl|Hg17|chr16 (32659133-32658795)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               cly (0.120642)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               ova (0.129132)
               

               
               cly (0.120642)

	3-683, gnl\|bosTau2\|chr7 (50776342-50777028)
	3-683, gnl\|Hg17\|chr16 (32659167-32657852)

	28-372, gnl\|bosTau2\|chr10 (13290717-13290381)
	28-372, gnl\|Hg17\|chr16 (32659133-32658795)

	fcc (0.197785)
	fbs (0.175346)
	nco (0.161734)
	csp (0.161186)
	bfe (0.149858)
	ssp (0.13552)
	ova (0.129132)
	cly (0.120642)