Ss1.1-rnco1913b_n3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGCCCCCGGCCCAACCAGAGGAGCCCGCGGGGGCCAAGCTCAGGTGCCCCTTCTCGGAC ATTTTCAACACCAGCGAGAACTCGATGGAGAAGCACATCAACACTTTTCTGCAAAACGTG CAGATTCTGCTCGAGGCCGCCAGCTACCTGGAGCAGATCGAGAAAGAAAACAAAAAGTGT GAACATGGCTATGCCTCAACGTTCCCCTCCATGCCGAGCCCCCGGATGCAGCATTCAAAG CCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGGAGCAGCAACACCAGCACT GCCAACAGGTCTACACACAATGAGCTGGAAAAGAATCGACGAGCTCACCTTCGCCTGTGT TTAGAACGCTTAAAAGTTTTGATTCCACTAGGACCAGATTGCACCAGGCACACAACACTT GGTTTGCTCAACAAAGCCAAAGCACACATTAAGAAACTTGAAGAAGCTGAAAGGAAGAGC CAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGATTTTTAAAGCGGCGTCTGGAACAG CTGCAGGGTCCTCAGGAGATGGAACGAATACGAATGGACAGCATTGGATCAACTATTTCT TCAGATCGTTCTGATTCAGAGCGAGAGGAGATTGAAGTGGATGTTGAAAGCACAGAGTTC TCCCATGGAGAAGTGGACAATATCAGTACCACCAGCATCAGTGACATTGATGACCACAGC AGCCTGCAGAGTATTGGGAGTGACGAGGGTTACTCCAGTGCCAGTGTCAAACTTTCGTTC ACTTCCTAGAACCCAGCATGACATAACAGTGCAGGGCAAAATACTCAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGCCCCCGGCCCAACCAGAGGAGCCCGCGGGGGCCAAGCTCAGGTGCCCCTTCTCGGAC ATTTTCAACACCAGCGAGAACTCGATGGAGAAGCACATCAACACTTTTCTGCAAAACGTG CAGATTCTGCTCGAGGCCGCCAGCTACCTGGAGCAGATCGAGAAAGAAAACAAAAAGTGT GAACATGGCTATGCCTCAACGTTCCCCTCCATGCCGAGCCCCCGGATGCAGCATTCAAAG CCCCCACGGAGGTTGAGCCGGGCACAGAAACACAGCAGTGGGAGCAGCAACACCAGCACT GCCAACAGGTCTACACACAATGAGCTGGAAAAGAATCGACGAGCTCACCTTCGCCTGTGT TTAGAACGCTTAAAAGTTTTGATTCCACTAGGACCAGATTGCACCAGGCACACAACACTT GGTTTGCTCAACAAAGCCAAAGCACACATTAAGAAACTTGAAGAAGCTGAAAGGAAGAGC CAGCACCAGCTAGAGAACTTGGAACGAGAACAGAGATTTTTAAAGCGGCGTCTGGAACAG CTGCAGGGTCCTCAGGAGATGGAACGAATACGAATGGACAGCATTGGATCAACTATTTCT TCAGATCGTTCTGATTCAGAGCGAGAGGAGATTGAAGTGGATGTTGAAAGCACAGAGTTC TCCCATGGAGAAGTGGACAATATCAGTACCACCAGCATCAGTGACATTGATGACCACAGC AGCCTGCAGAGTATTGGGAGTGACGAGGGTTACTCCAGTGCCAGTGTCAAACTTTCGTTC ACTTCCTAGAACCCAGCATGACATAACAGTGCAGGGCAAAATACTCAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 40-175, - strand, RNAz p=0.950679 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-175, - strand, RNAz p=0.950679 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-175, gnl|bosTau2|chr26 (19523300-19523126) | |
| 1-175, gnl|Hg17|chr10 (111957656-111957830) | |
| 1-175, gnl|Mm7|chr19 (53212617-53212791) | |
| 176-310, gnl|bosTau2|chr26 (19505548-19505414) | |
| 176-310, gnl|canFam2|chr28 (24604461-24604610) | |
| 176-310, gnl|dasNov1|scaffold_51390 (4355-4196) | |
| 176-310, gnl|echTel1|scaffold_215085 (1184-1327) | |
| 176-310, gnl|galGal2|chr6 (24888452-24888612) | |
| 176-310, gnl|hg17|chr10 (111977936-111978085) | |
| 176-310, gnl|Hg17|chr10 (111977937-111978071) | |
| 176-310, gnl|mm7|chr19 (53233462-53233614) | |
| 176-310, gnl|Mm7|chr19 (53233463-53233597) | |
| 176-310, gnl|monDom2|scaffold_14 (53124259-53124110) | |
| 176-310, gnl|rheMac2|chr9 (109918833-109918982) | |
| 176-310, gnl|rn3|chr1 (259721985-259722134) | |
| 338-453, gnl|bosTau2|chr26 (19442098-19441983) | |
| 338-453, gnl|canFam2|chr28 (24648293-24648429) | |
| 338-453, gnl|danRer3|chr22 (44568734-44568601) | |
| 338-453, gnl|dasNov1|scaffold_122747 (3662-3530) | |
| 338-453, gnl|echTel1|scaffold_312036 (62316-62455) | |
| 338-453, gnl|fr1|chrUn (8706390-8706255) | |
| 338-453, gnl|galGal2|chr6 (24926894-24927030) | |
| 338-453, gnl|hg17|chr10 (112028914-112029048) | |
| 338-453, gnl|Hg17|chr10 (112028927-112029042) | |
| 338-453, gnl|loxAfr1|scaffold_46113 (9168-9303) | |
| 338-453, gnl|mm7|chr19 (53271456-53271588) | |
| 338-453, gnl|Mm7|chr19 (53271467-53271582) | |
| 338-453, gnl|monDom2|scaffold_14 (53043163-53043026) | |
| 338-453, gnl|oryCun1|scaffold_167555 (4760-4894) | |
| 338-453, gnl|panTro1|chr8 (113939138-113939272) | |
| 338-453, gnl|rheMac2|chr9 (109970318-109970452) | |
| 338-453, gnl|rn3|chr1 (259756755-259756887) | |
| 338-453, gnl|tetNig1|chr18 (2368631-2368752) | |
| 338-453, gnl|xenTro1|scaffold_510 (282462-282328) | |
| 624-828, gnl|bosTau2|chr26 (19434562-19434358) | |
| 624-828, gnl|Hg17|chr10 (112034570-112034774) | |
| 624-828, gnl|Mm7|chr19 (53273497-53273701) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-175, gnl|bosTau2|chr26 (19523300-19523126) | |
| 1-175, gnl|Hg17|chr10 (111957656-111957830) | |
| 1-175, gnl|Mm7|chr19 (53212617-53212791) | |
| 176-310, gnl|bosTau2|chr26 (19505548-19505414) | |
| 176-310, gnl|canFam2|chr28 (24604461-24604610) | |
| 176-310, gnl|dasNov1|scaffold_51390 (4355-4196) | |
| 176-310, gnl|echTel1|scaffold_215085 (1184-1327) | |
| 176-310, gnl|galGal2|chr6 (24888452-24888612) | |
| 176-310, gnl|hg17|chr10 (111977936-111978085) | |
| 176-310, gnl|Hg17|chr10 (111977937-111978071) | |
| 176-310, gnl|mm7|chr19 (53233462-53233614) | |
| 176-310, gnl|Mm7|chr19 (53233463-53233597) | |
| 176-310, gnl|monDom2|scaffold_14 (53124259-53124110) | |
| 176-310, gnl|rheMac2|chr9 (109918833-109918982) | |
| 176-310, gnl|rn3|chr1 (259721985-259722134) | |
| 338-453, gnl|bosTau2|chr26 (19442098-19441983) | |
| 338-453, gnl|canFam2|chr28 (24648293-24648429) | |
| 338-453, gnl|danRer3|chr22 (44568734-44568601) | |
| 338-453, gnl|dasNov1|scaffold_122747 (3662-3530) | |
| 338-453, gnl|echTel1|scaffold_312036 (62316-62455) | |
| 338-453, gnl|fr1|chrUn (8706390-8706255) | |
| 338-453, gnl|galGal2|chr6 (24926894-24927030) | |
| 338-453, gnl|hg17|chr10 (112028914-112029048) | |
| 338-453, gnl|Hg17|chr10 (112028927-112029042) | |
| 338-453, gnl|loxAfr1|scaffold_46113 (9168-9303) | |
| 338-453, gnl|mm7|chr19 (53271456-53271588) | |
| 338-453, gnl|Mm7|chr19 (53271467-53271582) | |
| 338-453, gnl|monDom2|scaffold_14 (53043163-53043026) | |
| 338-453, gnl|oryCun1|scaffold_167555 (4760-4894) | |
| 338-453, gnl|panTro1|chr8 (113939138-113939272) | |
| 338-453, gnl|rheMac2|chr9 (109970318-109970452) | |
| 338-453, gnl|rn3|chr1 (259756755-259756887) | |
| 338-453, gnl|tetNig1|chr18 (2368631-2368752) | |
| 338-453, gnl|xenTro1|scaffold_510 (282462-282328) | |
| 624-828, gnl|bosTau2|chr26 (19434562-19434358) | |
| 624-828, gnl|Hg17|chr10 (112034570-112034774) | |
| 624-828, gnl|Mm7|chr19 (53273497-53273701) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cbl (0.229595) | |
| sin (0.174948) | |
| cje (0.165235) | |
| nco (0.161734) | |
| ldo (0.0970026) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) | |
| sin (0.174948) | |
| cje (0.165235) | |
| nco (0.161734) | |
| ldo (0.0970026) |