Non-Coding RNA Search

Ss1.1-rnco1914b_p19.5

Sequence:


               
               TCACAGACAGACGCCTGGTCAGCAGGGAAGCCAGTCTCATCCTATACCATCGCTGAGCCC
ACCCAGTGAAGCTGTTTCAGGCTGTGTATCTTGGACTGAATTCTACATACATATATATTG
TTCCAGACTAAGATAAGGGTTCTAGTTGACTGTTCGTGGTGCTGTCTCAGTAGGACAATG
AGACTCCAGCTTTTGCCCTCTGGAAAGGTTTTGACGTAAGTGCCATAGGCCATTGCAAGA
ACTGGCCCAGGGGGCCTTTCCACTAAGGGTCGCTCATGGCTTGACGGCAATGCTTCTCCT
TCTCCGTCCAGCGTAGACTTGGTCACCTTTGTCTCCTTTTTCTCCCTTGTGCCCTCGAGG
GCCGGGTGGCCCAGGCCGACCTGGTGGTCCTGCAGGGCCTCTCTCACCTTTGGGTCCAGA
GATGCCCACTTCTCCTTTCTGCCCAGGGGGTCCTGGGATGGCTCCATAAGTTCTGAAAAA
GTCCATGAGATCCGCAGTCACATTGCTGTAGGCAGAGAAGACCTTGCTGACTCCAGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACAGACAGACGCCTGGTCAGCAGGGAAGCCAGTCTCATCCTATACCATCGCTGAGCCC
ACCCAGTGAAGCTGTTTCAGGCTGTGTATCTTGGACTGAATTCTACATACATATATATTG
TTCCAGACTAAGATAAGGGTTCTAGTTGACTGTTCGTGGTGCTGTCTCAGTAGGACAATG
AGACTCCAGCTTTTGCCCTCTGGAAAGGTTTTGACGTAAGTGCCATAGGCCATTGCAAGA
ACTGGCCCAGGGGGCCTTTCCACTAAGGGTCGCTCATGGCTTGACGGCAATGCTTCTCCT
TCTCCGTCCAGCGTAGACTTGGTCACCTTTGTCTCCTTTTTCTCCCTTGTGCCCTCGAGG
GCCGGGTGGCCCAGGCCGACCTGGTGGTCCTGCAGGGCCTCTCTCACCTTTGGGTCCAGA
GATGCCCACTTCTCCTTTCTGCCCAGGGGGTCCTGGGATGGCTCCATAAGTTCTGAAAAA
GTCCATGAGATCCGCAGTCACATTGCTGTAGGCAGAGAAGACCTTGCTGACTCCAGGGGG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               55-328, gnl|bosTau2|chr26 (16271227-16270959)
               

               
               55-328, gnl|Hg17|chr10 (105781769-105782040)
               

               
               55-328, gnl|Mm7|chr19 (47547551-47547777)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-328, gnl|bosTau2|chr26 (16271227-16270959)
               

               
               55-328, gnl|Hg17|chr10 (105781769-105782040)
               

               
               55-328, gnl|Mm7|chr19 (47547551-47547777)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cga (0.279096)
               

               
               duo (0.172801)
               

               
               nco (0.161734)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               duo (0.172801)
               

               
               nco (0.161734)

	55-328, gnl\|bosTau2\|chr26 (16271227-16270959)
	55-328, gnl\|Hg17\|chr10 (105781769-105782040)
	55-328, gnl\|Mm7\|chr19 (47547551-47547777)