Ss1.1-rnco1915b_d10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGATACGTCGCATTTCCTTACTAGAAACCGGACCGCTGGATTTTTTTCTCCTCGCTGGA GTTTTTGGTGAGAGGTAAACATGTCCGGTCGCGGAAAGCAGGGAGGCAAAGTGCGAGCAA AGGCCAAGTCCCGCTCCTCCCGCGCGGGCCTGCAGTTCCCGGTGGGCAGAGTGCACAGAC TGCTGCGCAAAGGTAACTACGCGGAGAGAGTGGGCGCCGGCGCGCCGGTGTACCTGGCGG CGGTGTTGGAGTACCTGACCGCGGAGATCCTGGAGTTGGCTGGCAATGCCGCGCGGGACA ACAAGAAGACCAGGATAATCCCTCGCCACCTGCAACTCGCCATCCGCAACGACGAGGAGC TAAACAAGCTGCTGGGGAAAGTGACCATCGCTCAGGGCGGCGTCCTGCCCAACATCCAGG CCGTGCTGCTACCCAAGAAGACGGAGAGTCAGAAGACGAAGAGCAAGTGACCCTGACTCT GCTAGGGAAGCTGGCTTCCCCAGCCAAGCCTCTTCCCACAGCCGCCCCGCAGTGTTTTTG AATATGCTTAATGTTATGGAGGGCCGGCTTGGTCTAGTGGGGAGGTGGGCGGCAAAGGGC CCACCGGGGTCGGAGGCCAATAAAGTCAGTGAAAATCCAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGATACGTCGCATTTCCTTACTAGAAACCGGACCGCTGGATTTTTTTCTCCTCGCTGGA GTTTTTGGTGAGAGGTAAACATGTCCGGTCGCGGAAAGCAGGGAGGCAAAGTGCGAGCAA AGGCCAAGTCCCGCTCCTCCCGCGCGGGCCTGCAGTTCCCGGTGGGCAGAGTGCACAGAC TGCTGCGCAAAGGTAACTACGCGGAGAGAGTGGGCGCCGGCGCGCCGGTGTACCTGGCGG CGGTGTTGGAGTACCTGACCGCGGAGATCCTGGAGTTGGCTGGCAATGCCGCGCGGGACA ACAAGAAGACCAGGATAATCCCTCGCCACCTGCAACTCGCCATCCGCAACGACGAGGAGC TAAACAAGCTGCTGGGGAAAGTGACCATCGCTCAGGGCGGCGTCCTGCCCAACATCCAGG CCGTGCTGCTACCCAAGAAGACGGAGAGTCAGAAGACGAAGAGCAAGTGACCCTGACTCT GCTAGGGAAGCTGGCTTCCCCAGCCAAGCCTCTTCCCACAGCCGCCCCGCAGTGTTTTTG AATATGCTTAATGTTATGGAGGGCCGGCTTGGTCTAGTGGGGAGGTGGGCGGCAAAGGGC CCACCGGGGTCGGAGGCCAATAAAGTCAGTGAAAATCCAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-637, gnl|bosTau2|chr5 (57461602-57460960) | |
| 1-637, gnl|Hg17|chr12 (14818596-14819224) | |
| 80-527, gnl|bosTau2|chr3 (62459587-62460042) | |
| 80-527, gnl|canFam2|chr35 (28049740-28050185) | |
| 80-527, gnl|danRer3|chrUn (92027009-92026577) | |
| 80-527, gnl|dasNov1|scaffold_18013 (6752-7204) | |
| 80-527, gnl|echTel1|scaffold_102094 (3651-4108) | |
| 80-527, gnl|fr1|chrUn (292485702-292486122) | |
| 80-527, gnl|galGal2|chr1 (44852129-44852591) | |
| 80-527, gnl|hg17|chr6 (27913637-27914097) | |
| 80-527, gnl|Hg17|chr6 (27914097-27913638) | |
| 80-527, gnl|loxAfr1|scaffold_26491 (2228-1760) | |
| 80-527, gnl|mm7|chr13 (21176909-21176457) | |
| 80-527, gnl|Mm7|chr13 (21119817-21119367) | |
| 80-527, gnl|monDom2|scaffold_66 (8220775-8221231) | |
| 80-527, gnl|oryCun1|scaffold_91595 (868-1321) | |
| 80-527, gnl|panTro1|chr5 (28401903-28402353) | |
| 80-527, gnl|rheMac2|chr4 (27613250-27613710) | |
| 80-527, gnl|rn3|chr17 (50390757-50390326) | |
| 80-527, gnl|tetNig1|chrUn_random (134555232-134554816) | |
| 80-527, gnl|xenTro1|scaffold_450 (1015493-1015034) | |
| 81-474, gnl|bosTau2|chr12 (1673229-1672833) | |
| 81-474, gnl|Hg17|chr6 (26380762-26380415) | |
| 81-474, gnl|Mm7|chr13 (22899900-22900296) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-637, gnl|bosTau2|chr5 (57461602-57460960) | |
| 1-637, gnl|Hg17|chr12 (14818596-14819224) | |
| 80-527, gnl|bosTau2|chr3 (62459587-62460042) | |
| 80-527, gnl|canFam2|chr35 (28049740-28050185) | |
| 80-527, gnl|danRer3|chrUn (92027009-92026577) | |
| 80-527, gnl|dasNov1|scaffold_18013 (6752-7204) | |
| 80-527, gnl|echTel1|scaffold_102094 (3651-4108) | |
| 80-527, gnl|fr1|chrUn (292485702-292486122) | |
| 80-527, gnl|galGal2|chr1 (44852129-44852591) | |
| 80-527, gnl|hg17|chr6 (27913637-27914097) | |
| 80-527, gnl|Hg17|chr6 (27914097-27913638) | |
| 80-527, gnl|loxAfr1|scaffold_26491 (2228-1760) | |
| 80-527, gnl|mm7|chr13 (21176909-21176457) | |
| 80-527, gnl|Mm7|chr13 (21119817-21119367) | |
| 80-527, gnl|monDom2|scaffold_66 (8220775-8221231) | |
| 80-527, gnl|oryCun1|scaffold_91595 (868-1321) | |
| 80-527, gnl|panTro1|chr5 (28401903-28402353) | |
| 80-527, gnl|rheMac2|chr4 (27613250-27613710) | |
| 80-527, gnl|rn3|chr17 (50390757-50390326) | |
| 80-527, gnl|tetNig1|chrUn_random (134555232-134554816) | |
| 80-527, gnl|xenTro1|scaffold_450 (1015493-1015034) | |
| 81-474, gnl|bosTau2|chr12 (1673229-1672833) | |
| 81-474, gnl|Hg17|chr6 (26380762-26380415) | |
| 81-474, gnl|Mm7|chr13 (22899900-22900296) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| cli (0.458435) | |
| pty (0.428143) | |
| cov (0.396458) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| nmm (0.265604) | |
| nep (0.183925) | |
| fty (0.17584) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.458435) | |
| pty (0.428143) | |
| cov (0.396458) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| nmm (0.265604) | |
| nep (0.183925) | |
| fty (0.17584) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| nje (0.16592) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) |