Ss1.1-rnco1915b_e15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCTCTTTGGCCGCAATCACATTTACCAAGGGACCCTGGAGCTCCCCACGCCACT CATTGCCGCCCACCAGCTGTACAACTACGTGGCCGACCACGCCAGCTCCTACCACATGAA GCCGCTGCGGATGGCCCGGCCTGGGGGGCCCGAGCATAACGAGTACGCCCTGGTGTCAGC GTGGCACAGCTCCGGCTCCTACCTGGACGCGGAGGGACGTCGCCACCAGGACGACTTCGA CGTGTCTCTGCTTGTCTGCCACTGGGCTGCACCCTTCGAGGAACAAGGGGAAGCCGAGAG GCACGTTCTGCGGCTGCAGTTCTTCGTGGTGCTCACCAGCCAACGAGAGCTCTTCCCCAG ACTCACCGCTGACCTGCGCCGGTTCCGGAAGCCGCCCAGGCTGCCCCCTGAGCCAGAGGC TCCCGGGAGCTCAGCTGGTGGCCCTGGGGAGGTCTCCGGGGTTGGTCTGGCCCCTGGACC AGCCCCCCTCTTCCCTCCACTGGCTGCAGAGGTGGGCGTGGCACGGGCACGGCTGGCTCA GCTGGTACGGCTGGCTGGAGGGCACTGTCGCCGGGACACCCTTTGGAAGCGCCTCTTCTT GCTGGAACCAGCAGGACCTGATCGGCTGCGGCTAGGGGGGCGCCTGGCCCTGGCCGAGCT GGAGGAGCTCCTAGAAGCAGTCCATGCCAAATCCATTGGGGACATCGACCCCCAGCTGGA CTGCTTCCTGTCCATGACGGTCTCCTGGTACCAGAGCCTGATCAAGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCTCTTTGGCCGCAATCACATTTACCAAGGGACCCTGGAGCTCCCCACGCCACT CATTGCCGCCCACCAGCTGTACAACTACGTGGCCGACCACGCCAGCTCCTACCACATGAA GCCGCTGCGGATGGCCCGGCCTGGGGGGCCCGAGCATAACGAGTACGCCCTGGTGTCAGC GTGGCACAGCTCCGGCTCCTACCTGGACGCGGAGGGACGTCGCCACCAGGACGACTTCGA CGTGTCTCTGCTTGTCTGCCACTGGGCTGCACCCTTCGAGGAACAAGGGGAAGCCGAGAG GCACGTTCTGCGGCTGCAGTTCTTCGTGGTGCTCACCAGCCAACGAGAGCTCTTCCCCAG ACTCACCGCTGACCTGCGCCGGTTCCGGAAGCCGCCCAGGCTGCCCCCTGAGCCAGAGGC TCCCGGGAGCTCAGCTGGTGGCCCTGGGGAGGTCTCCGGGGTTGGTCTGGCCCCTGGACC AGCCCCCCTCTTCCCTCCACTGGCTGCAGAGGTGGGCGTGGCACGGGCACGGCTGGCTCA GCTGGTACGGCTGGCTGGAGGGCACTGTCGCCGGGACACCCTTTGGAAGCGCCTCTTCTT GCTGGAACCAGCAGGACCTGATCGGCTGCGGCTAGGGGGGCGCCTGGCCCTGGCCGAGCT GGAGGAGCTCCTAGAAGCAGTCCATGCCAAATCCATTGGGGACATCGACCCCCAGCTGGA CTGCTTCCTGTCCATGACGGTCTCCTGGTACCAGAGCCTGATCAAGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 351-550, - strand, RNAz p=0.969054 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 351-550, - strand, RNAz p=0.969054 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 34-196, gnl|bosTau2|chr3 (71803307-71803469) | |
| 34-196, gnl|Hg17|chr1 (43582307-43582469) | |
| 34-196, gnl|Mm7|chr4 (117742222-117742060) | |
| 312-719, gnl|bosTau2|chr3 (71803819-71804226) | |
| 312-719, gnl|canFam2|chr15 (19743808-19743386) | |
| 312-719, gnl|danRer3|chr22 (32686898-32687371) | |
| 312-719, gnl|dasNov1|scaffold_100651 (1041-1463) | |
| 312-719, gnl|echTel1|scaffold_321914 (75370-75792) | |
| 312-719, gnl|fr1|chrUn (254116071-254115550) | |
| 312-719, gnl|galGal2|chr8 (20064333-20064862) | |
| 312-719, gnl|hg17|chr1 (43582839-43583261) | |
| 312-719, gnl|Hg17|chr1 (43582842-43583249) | |
| 312-719, gnl|loxAfr1|scaffold_5124 (51716-52141) | |
| 312-719, gnl|mm7|chr4 (117741690-117741271) | |
| 312-719, gnl|Mm7|chr4 (117741685-117741278) | |
| 312-719, gnl|monDom2|scaffold_87 (11360-10914) | |
| 312-719, gnl|oryCun1|scaffold_158185 (25423-24995) | |
| 312-719, gnl|panTro1|chr1 (44562543-44562965) | |
| 312-719, gnl|rheMac2|chr1 (46355757-46356179) | |
| 312-719, gnl|rn3|chr5 (138851242-138850823) | |
| 312-719, gnl|tetNig1|chrUn_random (49642739-49643261) | |
| 312-719, gnl|xenTro1|scaffold_1 (5707825-5708286) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 34-196, gnl|bosTau2|chr3 (71803307-71803469) | |
| 34-196, gnl|Hg17|chr1 (43582307-43582469) | |
| 34-196, gnl|Mm7|chr4 (117742222-117742060) | |
| 312-719, gnl|bosTau2|chr3 (71803819-71804226) | |
| 312-719, gnl|canFam2|chr15 (19743808-19743386) | |
| 312-719, gnl|danRer3|chr22 (32686898-32687371) | |
| 312-719, gnl|dasNov1|scaffold_100651 (1041-1463) | |
| 312-719, gnl|echTel1|scaffold_321914 (75370-75792) | |
| 312-719, gnl|fr1|chrUn (254116071-254115550) | |
| 312-719, gnl|galGal2|chr8 (20064333-20064862) | |
| 312-719, gnl|hg17|chr1 (43582839-43583261) | |
| 312-719, gnl|Hg17|chr1 (43582842-43583249) | |
| 312-719, gnl|loxAfr1|scaffold_5124 (51716-52141) | |
| 312-719, gnl|mm7|chr4 (117741690-117741271) | |
| 312-719, gnl|Mm7|chr4 (117741685-117741278) | |
| 312-719, gnl|monDom2|scaffold_87 (11360-10914) | |
| 312-719, gnl|oryCun1|scaffold_158185 (25423-24995) | |
| 312-719, gnl|panTro1|chr1 (44562543-44562965) | |
| 312-719, gnl|rheMac2|chr1 (46355757-46356179) | |
| 312-719, gnl|rn3|chr5 (138851242-138850823) | |
| 312-719, gnl|tetNig1|chrUn_random (49642739-49643261) | |
| 312-719, gnl|xenTro1|scaffold_1 (5707825-5708286) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) |