Non-Coding RNA Search

Ss1.1-rnco1916b_k17.5

Sequence:


               
               AGAACGGCCTGAGCTGCACGGAGCAGCTGAATCGGTGTATCCGCTGGGCCGACGCCGTGG
TGATCGTCTTCTCCGTCACCGACTACAATAGCTACGAACTCACCGGCCAGCTCCACCAGC
ACGTGCAGCAGCTGCACCTGGGCGCCCGGCTGCCCGTGGTGGTCGTGGCCAACAAGGCCG
ACCTGCTGCACATCAAGCAGGTGGACCCCCAGCTCGGACTGCAGCTGGCCAGCATGCTGG
GCTGCTCCTTCTACGAAGTGTCCGTCAGCGAGAATGACAACGACGTCTACAACGCCTTCC
ACGTGCTGTGCAAAGAAGTGAGTCACAAGCAGCAGCCCAGCAGCACTCCAGAGAAGCGGC
GCACCTCCCTCATCCCCAGGCCCAAGTCCCCCAACATGCAGGACCTCAAGAGGAGGTTCA
AGCAAGCCCTCTCTGCCAAAGTCAGGACTGTCACCTCCGTCTGACGCTGGGGTGGGGCGC
TCCAGGGGGTTTGGTCTTCCCGGGAAGAGAGACCCGAGGTTCGGCAGGAACGTTGGATGC
TGGCAGTTAGTCACGGGTCCAGAAAGGGCTGGAGCCAAGGGGCCAAGAGAGCCTATGGAA
CTGCGGCCGAAGAGGAAGCGTTGTCCTAAGCAGGGGGACAGAACTGAGGTGGCTGGAACG
AGCCCACTGAGCCACCCTGTGAATATGTGAAACGTCCCCCGCCCCGTGTTGTGGCTCTTC
CTCTGGAGTGGGGGAGGGACACGAGGGGTTCAGATTTTGTCAACAACCTTGTAAATGACG
GTCAGTTGTAGTCTCCCCCATGTATTGATGTGCTTTACAGCGGGAATGAAGGAACAGATG
AAGCCTTCATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACGGCCTGAGCTGCACGGAGCAGCTGAATCGGTGTATCCGCTGGGCCGACGCCGTGG
TGATCGTCTTCTCCGTCACCGACTACAATAGCTACGAACTCACCGGCCAGCTCCACCAGC
ACGTGCAGCAGCTGCACCTGGGCGCCCGGCTGCCCGTGGTGGTCGTGGCCAACAAGGCCG
ACCTGCTGCACATCAAGCAGGTGGACCCCCAGCTCGGACTGCAGCTGGCCAGCATGCTGG
GCTGCTCCTTCTACGAAGTGTCCGTCAGCGAGAATGACAACGACGTCTACAACGCCTTCC
ACGTGCTGTGCAAAGAAGTGAGTCACAAGCAGCAGCCCAGCAGCACTCCAGAGAAGCGGC
GCACCTCCCTCATCCCCAGGCCCAAGTCCCCCAACATGCAGGACCTCAAGAGGAGGTTCA
AGCAAGCCCTCTCTGCCAAAGTCAGGACTGTCACCTCCGTCTGACGCTGGGGTGGGGCGC
TCCAGGGGGTTTGGTCTTCCCGGGAAGAGAGACCCGAGGTTCGGCAGGAACGTTGGATGC
TGGCAGTTAGTCACGGGTCCAGAAAGGGCTGGAGCCAAGGGGCCAAGAGAGCCTATGGAA
CTGCGGCCGAAGAGGAAGCGTTGTCCTAAGCAGGGGGACAGAACTGAGGTGGCTGGAACG
AGCCCACTGAGCCACCCTGTGAATATGTGAAACGTCCCCCGCCCCGTGTTGTGGCTCTTC
CTCTGGAGTGGGGGAGGGACACGAGGGGTTCAGATTTTGTCAACAACCTTGTAAATGACG
GTCAGTTGTAGTCTCCCCCATGTATTGATGTGCTTTACAGCGGGAATGAAGGAACAGATG
AAGCCTTCATGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12835767|dbj|BAB23353.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12835767|dbj|BAB23353.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-279, - strand, RNAz p=0.900834
               

               
               124-673, - strand, RNAz p=0.949886

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-279, - strand, RNAz p=0.900834
               

               
               124-673, - strand, RNAz p=0.949886

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-849, gnl|bosTau2|chr6 (37105717-37106541)
               

               
               1-849, gnl|Hg17|chr4 (53572437-53573282)
               

               
               1-849, gnl|Mm7|chr5 (73616811-73617577)
               


               
               45-444, gnl|bosTau2|chr12 (18178151-18177758)
               

               
               45-444, gnl|Hg17|chr13 (26745215-26745608)
               

               
               45-444, gnl|Mm7|chr5 (145741463-145741856)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-849, gnl|bosTau2|chr6 (37105717-37106541)
               

               
               1-849, gnl|Hg17|chr4 (53572437-53573282)
               

               
               1-849, gnl|Mm7|chr5 (73616811-73617577)
               


               
               45-444, gnl|bosTau2|chr12 (18178151-18177758)
               

               
               45-444, gnl|Hg17|chr13 (26745215-26745608)
               

               
               45-444, gnl|Mm7|chr5 (145741463-145741856)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nmm (0.265604)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)

	1-279, - strand, RNAz p=0.900834
	124-673, - strand, RNAz p=0.949886

	1-849, gnl\|bosTau2\|chr6 (37105717-37106541)
	1-849, gnl\|Hg17\|chr4 (53572437-53573282)
	1-849, gnl\|Mm7\|chr5 (73616811-73617577)

	45-444, gnl\|bosTau2\|chr12 (18178151-18177758)
	45-444, gnl\|Hg17\|chr13 (26745215-26745608)
	45-444, gnl\|Mm7\|chr5 (145741463-145741856)