Non-Coding RNA Search

Ss1.1-rnco1917b_a17.5

Sequence:


               
               CATTAGCTCGCTTTTAATAACAGCATACAAAATCTGGAGAAAGCCCCAAAGTAGTCCCCT
GTTCCCGGAGCCCAGCGCAAACCCTTGGAGCGCACGGAATAGAAATGGACAGGAAAACAC
GTCCCCGAGAACCTCTAACCGCAGAGCAGGAACCCTGTGAATGTTCCCGAGAACGCGGAT
GAAACAGCAGAGACCCAGCCGACGGCTCATTCCCGGTGGAAGGAGGACCACTTCTGATCT
CCGGGGCTCATGCTCTTGGGAAGAGCACACGTGTCACCTTAGACGGAAGCCCCTCAGGCT
GGAGTGAGACCGGGCTGGACGGCTGCCCACTCGAACGGACCAGACCAGACCAGACCAGCT
CTTTGCCTCAGTGACTGGTCTGAGAAACGGACCCAGCACGCCCCAAGGAAAAAAGCTCTA
GGAAACCAGGGAAGGTGAAACTCCCTGTCCCCTCCTGCAGCCTCAGAGGATGGAACCTTC
CGGGGGACACCGGCCCTGCCCTTCTGCCATCTGGCTGCCAAGCCCTCCCGGCTGCCCTCA
GAATCCAAATCCGCGGGTCGTGCCAGCCGAGGTGCGAACGGGTTGTCTCCACGTTGGAGG
TGTGTGTGTTGGTGATGCTCTTTGGCTGGAAGCGAAGGCCATTCTGGCGGGATCGGGGCC
CTCGGGGACCAGGCGCAGGGTGAGGTATTCCCAGCCCAGAGCAAAGCCGTCCGACAGCAG
GGCGCCTGGCTCCCGGCAGAGACCCACTTACGACCAAGTGGTAAGCAGGGGACGGGTGGC
GGGGGCGGACTCGGATGCTGAAGCTCACAGTACGGCCCTGCCAAACCTGACCCCGGTCTG
ACCCACCGGGCGCCCCCGAGGGGGCTCTGCCTGGGCTCCTGCGGCACGCGGGGGTCTGGG
CGCTCTGGATGCCGCTGTTCCTCTGCTCTGTTGCGGCCTCTTGGTGTCTCTGGTCCTCTT
TGGGTGCAGAGCATTCTCAGAGATGGGCCGGGGGGTGCTGGGTGGGCGCAGGGGTGGGAG
CGGAGCCAGCAGGGAGAACGAGGCACTTCCGTTTGGGCTGGTGTTCGTGGAGTCGGCCCT
GGCCCCGGGAGTCGAGCAGCCCCGCCTGGTTCTGGCTCCGGCGCTGGGTGGTCCCCGAAG
ACCCCAGTGGCGGTGGACAGGTAGGCACTTGGCAGCACTCCCAGGACTGGGCAGGGCTGG
GGGCTCGGCGCAGGCCCCGCGCACGGCTAGGTCATCAGGATGGGCTTCTGCCGGACCTCC
AGGATGTCTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTAGCTCGCTTTTAATAACAGCATACAAAATCTGGAGAAAGCCCCAAAGTAGTCCCCT
GTTCCCGGAGCCCAGCGCAAACCCTTGGAGCGCACGGAATAGAAATGGACAGGAAAACAC
GTCCCCGAGAACCTCTAACCGCAGAGCAGGAACCCTGTGAATGTTCCCGAGAACGCGGAT
GAAACAGCAGAGACCCAGCCGACGGCTCATTCCCGGTGGAAGGAGGACCACTTCTGATCT
CCGGGGCTCATGCTCTTGGGAAGAGCACACGTGTCACCTTAGACGGAAGCCCCTCAGGCT
GGAGTGAGACCGGGCTGGACGGCTGCCCACTCGAACGGACCAGACCAGACCAGACCAGCT
CTTTGCCTCAGTGACTGGTCTGAGAAACGGACCCAGCACGCCCCAAGGAAAAAAGCTCTA
GGAAACCAGGGAAGGTGAAACTCCCTGTCCCCTCCTGCAGCCTCAGAGGATGGAACCTTC
CGGGGGACACCGGCCCTGCCCTTCTGCCATCTGGCTGCCAAGCCCTCCCGGCTGCCCTCA
GAATCCAAATCCGCGGGTCGTGCCAGCCGAGGTGCGAACGGGTTGTCTCCACGTTGGAGG
TGTGTGTGTTGGTGATGCTCTTTGGCTGGAAGCGAAGGCCATTCTGGCGGGATCGGGGCC
CTCGGGGACCAGGCGCAGGGTGAGGTATTCCCAGCCCAGAGCAAAGCCGTCCGACAGCAG
GGCGCCTGGCTCCCGGCAGAGACCCACTTACGACCAAGTGGTAAGCAGGGGACGGGTGGC
GGGGGCGGACTCGGATGCTGAAGCTCACAGTACGGCCCTGCCAAACCTGACCCCGGTCTG
ACCCACCGGGCGCCCCCGAGGGGGCTCTGCCTGGGCTCCTGCGGCACGCGGGGGTCTGGG
CGCTCTGGATGCCGCTGTTCCTCTGCTCTGTTGCGGCCTCTTGGTGTCTCTGGTCCTCTT
TGGGTGCAGAGCATTCTCAGAGATGGGCCGGGGGGTGCTGGGTGGGCGCAGGGGTGGGAG
CGGAGCCAGCAGGGAGAACGAGGCACTTCCGTTTGGGCTGGTGTTCGTGGAGTCGGCCCT
GGCCCCGGGAGTCGAGCAGCCCCGCCTGGTTCTGGCTCCGGCGCTGGGTGGTCCCCGAAG
ACCCCAGTGGCGGTGGACAGGTAGGCACTTGGCAGCACTCCCAGGACTGGGCAGGGCTGG
GGGCTCGGCGCAGGCCCCGCGCACGGCTAGGTCATCAGGATGGGCTTCTGCCGGACCTCC
AGGATGTCTGTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               645-736, - strand, RNAz p=0.945035
               

               
               1089-1206, - strand, RNAz p=0.716817

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               645-736, - strand, RNAz p=0.945035
               

               
               1089-1206, - strand, RNAz p=0.716817

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC053595, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC053595, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-125, gnl|bosTau2|chr5 (72987108-72987231)
               

               
               1-125, gnl|canFam2|chr10 (23879790-23879568)
               

               
               1-125, gnl|dasNov1|scaffold_12552 (26048-26244)
               

               
               1-125, gnl|hg17|chr22 (43912169-43912374)
               

               
               1-125, gnl|Hg17|chr22 (43912253-43912356)
               

               
               1-125, gnl|loxAfr1|scaffold_26934 (4115-4316)
               

               
               1-125, gnl|mm7|chr15 (85030240-85030446)
               

               
               1-125, gnl|monDom2|scaffold_107 (142749-142922)
               

               
               1-125, gnl|oryCun1|scaffold_168684 (626-421)
               

               
               1-125, gnl|panTro1|chr23 (44235368-44235574)
               

               
               1-125, gnl|rheMac2|chr10 (89182107-89182312)
               

               
               1-125, gnl|rn3|chr7 (123004086-123004291)
               


               
               494-1269, gnl|bosTau2|chr5 (72987673-72988461)
               

               
               494-1269, gnl|Hg17|chr22 (43912810-43913636)
               

               
               494-1269, gnl|Mm7|chr15 (85030824-85031601)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-125, gnl|bosTau2|chr5 (72987108-72987231)
               

               
               1-125, gnl|canFam2|chr10 (23879790-23879568)
               

               
               1-125, gnl|dasNov1|scaffold_12552 (26048-26244)
               

               
               1-125, gnl|hg17|chr22 (43912169-43912374)
               

               
               1-125, gnl|Hg17|chr22 (43912253-43912356)
               

               
               1-125, gnl|loxAfr1|scaffold_26934 (4115-4316)
               

               
               1-125, gnl|mm7|chr15 (85030240-85030446)
               

               
               1-125, gnl|monDom2|scaffold_107 (142749-142922)
               

               
               1-125, gnl|oryCun1|scaffold_168684 (626-421)
               

               
               1-125, gnl|panTro1|chr23 (44235368-44235574)
               

               
               1-125, gnl|rheMac2|chr10 (89182107-89182312)
               

               
               1-125, gnl|rn3|chr7 (123004086-123004291)
               


               
               494-1269, gnl|bosTau2|chr5 (72987673-72988461)
               

               
               494-1269, gnl|Hg17|chr22 (43912810-43913636)
               

               
               494-1269, gnl|Mm7|chr15 (85030824-85031601)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               fhi (0.339155)
               

               
               cov (0.264306)
               

               
               pgl (0.236967)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               cov (0.264306)
               

               
               pgl (0.236967)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	645-736, - strand, RNAz p=0.945035
	1089-1206, - strand, RNAz p=0.716817

	1-125, gnl\|bosTau2\|chr5 (72987108-72987231)
	1-125, gnl\|canFam2\|chr10 (23879790-23879568)
	1-125, gnl\|dasNov1\|scaffold_12552 (26048-26244)
	1-125, gnl\|hg17\|chr22 (43912169-43912374)
	1-125, gnl\|Hg17\|chr22 (43912253-43912356)
	1-125, gnl\|loxAfr1\|scaffold_26934 (4115-4316)
	1-125, gnl\|mm7\|chr15 (85030240-85030446)
	1-125, gnl\|monDom2\|scaffold_107 (142749-142922)
	1-125, gnl\|oryCun1\|scaffold_168684 (626-421)
	1-125, gnl\|panTro1\|chr23 (44235368-44235574)
	1-125, gnl\|rheMac2\|chr10 (89182107-89182312)
	1-125, gnl\|rn3\|chr7 (123004086-123004291)

	494-1269, gnl\|bosTau2\|chr5 (72987673-72988461)
	494-1269, gnl\|Hg17\|chr22 (43912810-43913636)
	494-1269, gnl\|Mm7\|chr15 (85030824-85031601)

	fhi (0.339155)
	cov (0.264306)
	pgl (0.236967)
	nlu (0.191681)
	nco (0.161734)
	csp (0.161186)
	hyp (0.142837)
	med (0.116252)
	eje (0.0988338)