Non-Coding RNA Search

Ss1.1-rnco1918b_d24.5

Sequence:


               
               TGTCATTTTATTTTGTTTCTGTTTCCTAATTCCTTCTGAAATTCAAGGAGTGTATACAGT
TGGGTGTATGTGTTTGTGTACATGACGCACATCCATAAATCAGCTCTAAATTATCTGGCG
TGTGGCTAACATTCCTTAATGAGATTAACACTTTTAAGTGTATAAATTTATATGTTCTCC
CTCGGTTAATCTTTTTAAATGTCACTTTTACAAACCCTCATACAAGTGTGTTTATAAGTC
TTATAAGATAAGACTAAATATATCAGCTGTCTGTGGTTTGTTTTGTTTTTTTTTTTTCCT
CTCCTTCAAGGCACTGGAACGGGTTGCAGTTGGCCAAGGGGTAAGTAAGAGCGTTTGCTC
TAATCCAGCTGACGAACGCGATAGTTTTTCTCCAAGTGCTCGTCATGCTTGACCTGCCGA
TGAGCTTAAAACCTGATGGACTTTAGTAAATATCACCTCTTCTTGTCACCTGCTTATATT
CAAATTTATACATTTTCTGTACATTTACTTGAAAAAAGATAGGAGCTTTCAGGAAAAGTA
AATTGACCATTTAGGAAAACCACCACATTATACGCTTGTACTACTGCCTCATTTCTTCAT
ATTATATTAAACACTTTAGAAATATTTCTAAACATGCTGTTGCTGACTGTCAGGCTTTTA
TGGATTTAGTTCAAGCAAAGGTAAATGAGGTATAGCATTCAATTTATTTTTTAATTGTAG
TCTGAAACACATTTAGGTTTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCATTTTATTTTGTTTCTGTTTCCTAATTCCTTCTGAAATTCAAGGAGTGTATACAGT
TGGGTGTATGTGTTTGTGTACATGACGCACATCCATAAATCAGCTCTAAATTATCTGGCG
TGTGGCTAACATTCCTTAATGAGATTAACACTTTTAAGTGTATAAATTTATATGTTCTCC
CTCGGTTAATCTTTTTAAATGTCACTTTTACAAACCCTCATACAAGTGTGTTTATAAGTC
TTATAAGATAAGACTAAATATATCAGCTGTCTGTGGTTTGTTTTGTTTTTTTTTTTTCCT
CTCCTTCAAGGCACTGGAACGGGTTGCAGTTGGCCAAGGGGTAAGTAAGAGCGTTTGCTC
TAATCCAGCTGACGAACGCGATAGTTTTTCTCCAAGTGCTCGTCATGCTTGACCTGCCGA
TGAGCTTAAAACCTGATGGACTTTAGTAAATATCACCTCTTCTTGTCACCTGCTTATATT
CAAATTTATACATTTTCTGTACATTTACTTGAAAAAAGATAGGAGCTTTCAGGAAAAGTA
AATTGACCATTTAGGAAAACCACCACATTATACGCTTGTACTACTGCCTCATTTCTTCAT
ATTATATTAAACACTTTAGAAATATTTCTAAACATGCTGTTGCTGACTGTCAGGCTTTTA
TGGATTTAGTTCAAGCAAAGGTAAATGAGGTATAGCATTCAATTTATTTTTTAATTGTAG
TCTGAAACACATTTAGGTTTTTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               46-147, + strand, RNAz p=0.717712

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               46-147, + strand, RNAz p=0.717712

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               7-731, gnl|bosTau2|chr5 (9193732-9194452)
               

               
               7-731, gnl|Hg17|chr12 (81330642-81331334)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-731, gnl|bosTau2|chr5 (9193732-9194452)
               

               
               7-731, gnl|Hg17|chr12 (81330642-81331334)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	7-731, gnl\|bosTau2\|chr5 (9193732-9194452)
	7-731, gnl\|Hg17\|chr12 (81330642-81331334)