Non-Coding RNA Search

Ss1.1-rnco1919b_j11.5

Sequence:


               
               TAAGCCACATAATATGCTAAAATGGTAAGTTTTCCTTTTGGTGTTTCTGTTTAAGAAACA
TGGAATTAAACAGCAACAATAAAAAATAACACACAGTCCACCAAAATGCAGGCGCGCGCG
CACACACACACACACACGCACACACAGACACACACACACTTTTTGGTATTGACGACAATG
ATGGCCAGAAAATAGATCACGACATTCTGTTTTCTTCTGTCAATGGCAATTTAATAGTTA
TTCATGTGTAAGTTCCCAGAGAAGAATGATTTTCATGTATAGTAACTTGTTACTGTTTTG
GTTTAAAGCCAGGACTTGCCAAATGGACAGAAAAGAGAAGAATTTGTCAGAAGCTCCATA
AAATTCATTTTCTATATGCATAATTCTAAGTGAGCTGTGGTATGGTCCTTGAATAGCAGT
ATTAATGTTTCAAATCTCTTATCATAAGCTTACCTTCACAACTATTCATTTTGATTGAAA
CTTGTTTTGGATCTTGTTGAGCGATTTCTGTGACTTGTACTTATGTAAAATTAATTATGG
GTTACTAGTTTTACAAAAACTTTCTACAAATTTGGAGACACAGTCTAGGCAGTTGCAAAG
AGGCAAAAGGGAGTGCAGTGACATTTTTTTATCAGATGATTTTTAAACAAAAAATAGAAA
ATTTTGACAAGT------------TTCATTCATTATAGCCGTTGTTAGCTGCAGGTGTGT
CTTTCCAATATATGCAACACATATAGTTTGGGTTTTAATTAGAGCAAATGGTCTTGGACT
ACTGCAGAGATACTGAGCTACCTCAGCTTTTTGTATTTTAGTTAACCAACAGTGGTTACA
GAGTTGTGTATTCACTTTGCCACCGTTTACATGCTGAAGCTAAGGTACTTGTCTCCTCGT
CTCTGGCTCTTTGTAGGGTGCTGGATGCCAGCGCAGAAAGCACGCTTTGGCCAAGGCTAC
TGCAGTAATCTTAAGTGCTTCTTTGCTTTTGCATTAACATTTTACACCTCCTAATTATAG
CTTAATGTTTAAATAATGCCACTTATTTTCTTTATACCTGGTCTATGAAGTTTTCGTAAT
ATTCAGTTAGTCACGTTCAAGATGCTACCCGTGTAGACACACTGTATTTTTAAGGTGGGC
AAGTGCGATTAACGATGAACCAATTTTAAAGGGGAGGTTATTTGAAACCTCTAATTTGAT
TATGGGGAGGATTTTCATGCTTTCTTTAGTATTTATTACCATCATACCAGTTCAAGCTAT
TTTACTGTCTAATACATTAGCATTTGGTATTTGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGCCACATAATATGCTAAAATGGTAAGTTTTCCTTTTGGTGTTTCTGTTTAAGAAACA
TGGAATTAAACAGCAACAATAAAAAATAACACACAGTCCACCAAAATGCAGGCGCGCGCG
CACACACACACACACACGCACACACAGACACACACACACTTTTTGGTATTGACGACAATG
ATGGCCAGAAAATAGATCACGACATTCTGTTTTCTTCTGTCAATGGCAATTTAATAGTTA
TTCATGTGTAAGTTCCCAGAGAAGAATGATTTTCATGTATAGTAACTTGTTACTGTTTTG
GTTTAAAGCCAGGACTTGCCAAATGGACAGAAAAGAGAAGAATTTGTCAGAAGCTCCATA
AAATTCATTTTCTATATGCATAATTCTAAGTGAGCTGTGGTATGGTCCTTGAATAGCAGT
ATTAATGTTTCAAATCTCTTATCATAAGCTTACCTTCACAACTATTCATTTTGATTGAAA
CTTGTTTTGGATCTTGTTGAGCGATTTCTGTGACTTGTACTTATGTAAAATTAATTATGG
GTTACTAGTTTTACAAAAACTTTCTACAAATTTGGAGACACAGTCTAGGCAGTTGCAAAG
AGGCAAAAGGGAGTGCAGTGACATTTTTTTATCAGATGATTTTTAAACAAAAAATAGAAA
ATTTTGACAAGT------------TTCATTCATTATAGCCGTTGTTAGCTGCAGGTGTGT
CTTTCCAATATATGCAACACATATAGTTTGGGTTTTAATTAGAGCAAATGGTCTTGGACT
ACTGCAGAGATACTGAGCTACCTCAGCTTTTTGTATTTTAGTTAACCAACAGTGGTTACA
GAGTTGTGTATTCACTTTGCCACCGTTTACATGCTGAAGCTAAGGTACTTGTCTCCTCGT
CTCTGGCTCTTTGTAGGGTGCTGGATGCCAGCGCAGAAAGCACGCTTTGGCCAAGGCTAC
TGCAGTAATCTTAAGTGCTTCTTTGCTTTTGCATTAACATTTTACACCTCCTAATTATAG
CTTAATGTTTAAATAATGCCACTTATTTTCTTTATACCTGGTCTATGAAGTTTTCGTAAT
ATTCAGTTAGTCACGTTCAAGATGCTACCCGTGTAGACACACTGTATTTTTAAGGTGGGC
AAGTGCGATTAACGATGAACCAATTTTAAAGGGGAGGTTATTTGAAACCTCTAATTTGAT
TATGGGGAGGATTTTCATGCTTTCTTTAGTATTTATTACCATCATACCAGTTCAAGCTAT
TTTACTGTCTAATACATTAGCATTTGGTATTTGGAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               764-883, - strand, RNAz p=0.965226

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               764-883, - strand, RNAz p=0.965226

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               793-938, - strand, RNAmicro p=0.994392
               

               
               801-921, + strand, RNAmicro p=0.993074

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               793-938, - strand, RNAmicro p=0.994392
               

               
               801-921, + strand, RNAmicro p=0.993074

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-106, gnl|bosTau2|chr11 (56093965-56093856)
               

               
               1-106, gnl|canFam2|chr17 (21257414-21258735)
               

               
               1-106, gnl|dasNov1|scaffold_11063 (51597-50303)
               

               
               1-106, gnl|echTel1|scaffold_315918 (8487-9898)
               

               
               1-106, gnl|galGal2|chr3 (102186093-102187329)
               

               
               1-106, gnl|hg17|chr2 (23884686-23885994)
               

               
               1-106, gnl|Hg17|chr2 (23885817-23885706)
               

               
               1-106, gnl|loxAfr1|scaffold_5370 (88957-90301)
               

               
               1-106, gnl|mm7|chr12 (4989941-4988676)
               

               
               1-106, gnl|Mm7|chr12 (4988847-4988946)
               

               
               1-106, gnl|oryCun1|scaffold_178145 (9146-10453)
               

               
               1-106, gnl|panTro1|chr12 (24771132-24772437)
               

               
               1-106, gnl|rheMac2|chr13 (23654369-23655684)
               

               
               1-106, gnl|rn3|chr6 (28372948-28371669)
               


               
               153-1284, gnl|bosTau2|chr11 (56093848-56092715)
               

               
               153-1284, gnl|Hg17|chr2 (23885698-23884574)
               

               
               153-1284, gnl|Mm7|chr12 (4988949-4990051)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-106, gnl|bosTau2|chr11 (56093965-56093856)
               

               
               1-106, gnl|canFam2|chr17 (21257414-21258735)
               

               
               1-106, gnl|dasNov1|scaffold_11063 (51597-50303)
               

               
               1-106, gnl|echTel1|scaffold_315918 (8487-9898)
               

               
               1-106, gnl|galGal2|chr3 (102186093-102187329)
               

               
               1-106, gnl|hg17|chr2 (23884686-23885994)
               

               
               1-106, gnl|Hg17|chr2 (23885817-23885706)
               

               
               1-106, gnl|loxAfr1|scaffold_5370 (88957-90301)
               

               
               1-106, gnl|mm7|chr12 (4989941-4988676)
               

               
               1-106, gnl|Mm7|chr12 (4988847-4988946)
               

               
               1-106, gnl|oryCun1|scaffold_178145 (9146-10453)
               

               
               1-106, gnl|panTro1|chr12 (24771132-24772437)
               

               
               1-106, gnl|rheMac2|chr13 (23654369-23655684)
               

               
               1-106, gnl|rn3|chr6 (28372948-28371669)
               


               
               153-1284, gnl|bosTau2|chr11 (56093848-56092715)
               

               
               153-1284, gnl|Hg17|chr2 (23885698-23884574)
               

               
               153-1284, gnl|Mm7|chr12 (4988949-4990051)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               ste (0.135208)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               ste (0.135208)
               

               
               ecc (0.115035)

	793-938, - strand, RNAmicro p=0.994392
	801-921, + strand, RNAmicro p=0.993074

	1-106, gnl\|bosTau2\|chr11 (56093965-56093856)
	1-106, gnl\|canFam2\|chr17 (21257414-21258735)
	1-106, gnl\|dasNov1\|scaffold_11063 (51597-50303)
	1-106, gnl\|echTel1\|scaffold_315918 (8487-9898)
	1-106, gnl\|galGal2\|chr3 (102186093-102187329)
	1-106, gnl\|hg17\|chr2 (23884686-23885994)
	1-106, gnl\|Hg17\|chr2 (23885817-23885706)
	1-106, gnl\|loxAfr1\|scaffold_5370 (88957-90301)
	1-106, gnl\|mm7\|chr12 (4989941-4988676)
	1-106, gnl\|Mm7\|chr12 (4988847-4988946)
	1-106, gnl\|oryCun1\|scaffold_178145 (9146-10453)
	1-106, gnl\|panTro1\|chr12 (24771132-24772437)
	1-106, gnl\|rheMac2\|chr13 (23654369-23655684)
	1-106, gnl\|rn3\|chr6 (28372948-28371669)

	153-1284, gnl\|bosTau2\|chr11 (56093848-56092715)
	153-1284, gnl\|Hg17\|chr2 (23885698-23884574)
	153-1284, gnl\|Mm7\|chr12 (4988949-4990051)