Ss1.1-rnco1919b_l13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGGAGCTCTGGAAAAGGGGTACTTGGTTAAATGCAGGGAGGAATGGGCGAAGACCAAA GACCCAGCTGCTGCCCTCCGAAAACTGCCTGTCAAAAGGTGTGTGGAAGGGCAGCTGCTC CGAGGACTTTCAAAGTACGGAATGAAGAATATAGTCTCTGCATTCGGCATAATACCAAGA AATAATCGGTTAATGTATATCCATAGCTATCAGAGCTATGTGTGGAACAACATGGTGAGC AAGAGGATAGAAGAGTACGGACTGAAGCCTGTCCCTGGGGACCTTGTTCTCAAAGGAGCC ACAGCCACGTATATTGAGGAAGAAGATGTTAATAATTACTCCATCCATGATGTGGTAATG CCCTTGCCTGGTTTTGATATTATCTACCCCAAACATAAAATTAGTGAAGCCTACAGGGAA ATGCTCACAGCGGACAATCTTGATATTGACAACATGAGACATAAAATTCGAGATTATTCC TTATCAGGGGCCTACCGAAAGATCATTATTCGTCCTCAGAATGTTAGCTGGGAAGTCGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGGAGCTCTGGAAAAGGGGTACTTGGTTAAATGCAGGGAGGAATGGGCGAAGACCAAA GACCCAGCTGCTGCCCTCCGAAAACTGCCTGTCAAAAGGTGTGTGGAAGGGCAGCTGCTC CGAGGACTTTCAAAGTACGGAATGAAGAATATAGTCTCTGCATTCGGCATAATACCAAGA AATAATCGGTTAATGTATATCCATAGCTATCAGAGCTATGTGTGGAACAACATGGTGAGC AAGAGGATAGAAGAGTACGGACTGAAGCCTGTCCCTGGGGACCTTGTTCTCAAAGGAGCC ACAGCCACGTATATTGAGGAAGAAGATGTTAATAATTACTCCATCCATGATGTGGTAATG CCCTTGCCTGGTTTTGATATTATCTACCCCAAACATAAAATTAGTGAAGCCTACAGGGAA ATGCTCACAGCGGACAATCTTGATATTGACAACATGAGACATAAAATTCGAGATTATTCC TTATCAGGGGCCTACCGAAAGATCATTATTCGTCCTCAGAATGTTAGCTGGGAAGTCGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 13-171, + strand, RNAz p=0.939263 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 13-171, + strand, RNAz p=0.939263 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 13-171, gnl|bosTau2|chr4 (22820960-22821118) | |
| 13-171, gnl|canFam2|chr18 (17920858-17920685) | |
| 13-171, gnl|danRer3|chrNA (102382499-102382646) | |
| 13-171, gnl|dasNov1|scaffold_8373 (7291-7464) | |
| 13-171, gnl|echTel1|scaffold_309680 (39807-39634) | |
| 13-171, gnl|fr1|chrUn (66749509-66749340) | |
| 13-171, gnl|galGal2|chr1 (9698531-9698700) | |
| 13-171, gnl|hg17|chr7 (104705076-104705249) | |
| 13-171, gnl|Hg17|chr7 (104705244-104705086) | |
| 13-171, gnl|loxAfr1|scaffold_24049 (23864-24037) | |
| 13-171, gnl|mm7|chr5 (22789166-22789339) | |
| 13-171, gnl|Mm7|chr5 (22789334-22789176) | |
| 13-171, gnl|monDom2|scaffold_30 (31721972-31722145) | |
| 13-171, gnl|oryCun1|scaffold_199536 (116-269) | |
| 13-171, gnl|panTro1|chr6 (106544876-106545049) | |
| 13-171, gnl|rheMac2|chr3 (142883844-142884017) | |
| 13-171, gnl|rn3|chr4 (6766348-6766175) | |
| 13-171, gnl|tetNig1|chr13 (9023027-9022859) | |
| 13-171, gnl|xenTro1|scaffold_61 (2625011-2624838) | |
| 172-298, gnl|bosTau2|chr4 (22822379-22822505) | |
| 172-298, gnl|canFam2|chr18 (17921894-17921771) | |
| 172-298, gnl|danRer3|chr7 (248865-248750) | |
| 172-298, gnl|dasNov1|scaffold_8373 (6211-6340) | |
| 172-298, gnl|echTel1|scaffold_309680 (41417-41293) | |
| 172-298, gnl|fr1|chrUn (66749773-66749658) | |
| 172-298, gnl|galGal2|chr1 (9697535-9697656) | |
| 172-298, gnl|hg17|chr7 (104702720-104702843) | |
| 172-298, gnl|Hg17|chr7 (104702861-104702735) | |
| 172-298, gnl|loxAfr1|scaffold_24049 (22764-22888) | |
| 172-298, gnl|mm7|chr5 (22788272-22788395) | |
| 172-298, gnl|Mm7|chr5 (22788413-22788287) | |
| 172-298, gnl|monDom2|scaffold_30 (31720207-31720323) | |
| 172-298, gnl|oryCun1|scaffold_214333 (1121-1244) | |
| 172-298, gnl|panTro1|chr6 (106542544-106542667) | |
| 172-298, gnl|rheMac2|chr3 (142881653-142881776) | |
| 172-298, gnl|rn3|chr4 (6767224-6767101) | |
| 172-298, gnl|tetNig1|chr13 (9023282-9023173) | |
| 172-298, gnl|xenTro1|scaffold_61 (2626046-2625935) | |
| 401-536, gnl|bosTau2|chr4 (22826323-22826458) | |
| 401-536, gnl|canFam2|chr18 (17926247-17926044) | |
| 401-536, gnl|danRer3|chrNA (102381579-102381735) | |
| 401-536, gnl|echTel1|scaffold_309680 (45265-45061) | |
| 401-536, gnl|fr1|chrUn (66750315-66750116) | |
| 401-536, gnl|galGal2|chr1 (9693843-9694020) | |
| 401-536, gnl|hg17|chr7 (104696988-104697195) | |
| 401-536, gnl|Hg17|chr7 (104697148-104697013) | |
| 401-536, gnl|loxAfr1|scaffold_24049 (17775-17981) | |
| 401-536, gnl|mm7|chr5 (22783905-22784084) | |
| 401-536, gnl|Mm7|chr5 (22784039-22783904) | |
| 401-536, gnl|monDom2|scaffold_30 (31716287-31716484) | |
| 401-536, gnl|panTro1|chr6 (106536836-106537043) | |
| 401-536, gnl|rheMac2|chr3 (142875606-142875813) | |
| 401-536, gnl|rn3|chr4 (6772558-6772360) | |
| 401-536, gnl|tetNig1|chr13 (9023670-9023520) | |
| 401-536, gnl|xenTro1|scaffold_61 (2628361-2628188) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 13-171, gnl|bosTau2|chr4 (22820960-22821118) | |
| 13-171, gnl|canFam2|chr18 (17920858-17920685) | |
| 13-171, gnl|danRer3|chrNA (102382499-102382646) | |
| 13-171, gnl|dasNov1|scaffold_8373 (7291-7464) | |
| 13-171, gnl|echTel1|scaffold_309680 (39807-39634) | |
| 13-171, gnl|fr1|chrUn (66749509-66749340) | |
| 13-171, gnl|galGal2|chr1 (9698531-9698700) | |
| 13-171, gnl|hg17|chr7 (104705076-104705249) | |
| 13-171, gnl|Hg17|chr7 (104705244-104705086) | |
| 13-171, gnl|loxAfr1|scaffold_24049 (23864-24037) | |
| 13-171, gnl|mm7|chr5 (22789166-22789339) | |
| 13-171, gnl|Mm7|chr5 (22789334-22789176) | |
| 13-171, gnl|monDom2|scaffold_30 (31721972-31722145) | |
| 13-171, gnl|oryCun1|scaffold_199536 (116-269) | |
| 13-171, gnl|panTro1|chr6 (106544876-106545049) | |
| 13-171, gnl|rheMac2|chr3 (142883844-142884017) | |
| 13-171, gnl|rn3|chr4 (6766348-6766175) | |
| 13-171, gnl|tetNig1|chr13 (9023027-9022859) | |
| 13-171, gnl|xenTro1|scaffold_61 (2625011-2624838) | |
| 172-298, gnl|bosTau2|chr4 (22822379-22822505) | |
| 172-298, gnl|canFam2|chr18 (17921894-17921771) | |
| 172-298, gnl|danRer3|chr7 (248865-248750) | |
| 172-298, gnl|dasNov1|scaffold_8373 (6211-6340) | |
| 172-298, gnl|echTel1|scaffold_309680 (41417-41293) | |
| 172-298, gnl|fr1|chrUn (66749773-66749658) | |
| 172-298, gnl|galGal2|chr1 (9697535-9697656) | |
| 172-298, gnl|hg17|chr7 (104702720-104702843) | |
| 172-298, gnl|Hg17|chr7 (104702861-104702735) | |
| 172-298, gnl|loxAfr1|scaffold_24049 (22764-22888) | |
| 172-298, gnl|mm7|chr5 (22788272-22788395) | |
| 172-298, gnl|Mm7|chr5 (22788413-22788287) | |
| 172-298, gnl|monDom2|scaffold_30 (31720207-31720323) | |
| 172-298, gnl|oryCun1|scaffold_214333 (1121-1244) | |
| 172-298, gnl|panTro1|chr6 (106542544-106542667) | |
| 172-298, gnl|rheMac2|chr3 (142881653-142881776) | |
| 172-298, gnl|rn3|chr4 (6767224-6767101) | |
| 172-298, gnl|tetNig1|chr13 (9023282-9023173) | |
| 172-298, gnl|xenTro1|scaffold_61 (2626046-2625935) | |
| 401-536, gnl|bosTau2|chr4 (22826323-22826458) | |
| 401-536, gnl|canFam2|chr18 (17926247-17926044) | |
| 401-536, gnl|danRer3|chrNA (102381579-102381735) | |
| 401-536, gnl|echTel1|scaffold_309680 (45265-45061) | |
| 401-536, gnl|fr1|chrUn (66750315-66750116) | |
| 401-536, gnl|galGal2|chr1 (9693843-9694020) | |
| 401-536, gnl|hg17|chr7 (104696988-104697195) | |
| 401-536, gnl|Hg17|chr7 (104697148-104697013) | |
| 401-536, gnl|loxAfr1|scaffold_24049 (17775-17981) | |
| 401-536, gnl|mm7|chr5 (22783905-22784084) | |
| 401-536, gnl|Mm7|chr5 (22784039-22783904) | |
| 401-536, gnl|monDom2|scaffold_30 (31716287-31716484) | |
| 401-536, gnl|panTro1|chr6 (106536836-106537043) | |
| 401-536, gnl|rheMac2|chr3 (142875606-142875813) | |
| 401-536, gnl|rn3|chr4 (6772558-6772360) | |
| 401-536, gnl|tetNig1|chr13 (9023670-9023520) | |
| 401-536, gnl|xenTro1|scaffold_61 (2628361-2628188) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) |