Ss1.1-rnco1922b_g5.5
|
GTTTATTTGGAGGGTTCCTGCTGCAGCAGGCCCCTCTCCCCCGCAATAGAAGGAGGGGTG
CAGCCCCCGGGGCGGGGGGGGGGCAGGAGGAAGGTTCAGGGAGCAAAGATCCCTATAAAC
CAGCCCCAGCCGCTCCTCAGCGCCTGTCCTTGGAGGGGAGGAAACACAGGGACTTGGGGC
TTTGAACCTAAGGTTGTTCCCCTAGTTCTATATGAAGGTGGAGGGTCCCAAGTTCCTTGC
CTCTGAACTCCCAGCCTGCCACAGGCTGGGCTCTTGCGGCTGGACTCATTTGAGATAGGA
GTCACCAGGTGACCAGTGGGAGTCTCCTGCCCCCAGTCAGATGAGAAAACTAGGTCCTGG
GTTAGCTCTGAGGCCATATGTTCCTGGGGGTGGTGGCCTGGTGGGAGCAGGGAACCTAGA
GATCTGGTCTGGGGGGTGGGACAAGGTGGGGTGGNGGGTGGTAATGGGACACTGGGACCA
CCAGTCTTGTCTGTACTGTATGTCGCCAGCATTGCCATACAAACACGAAGCACAATCAGT |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTTTATTTGGAGGGTTCCTGCTGCAGCAGGCCCCTCTCCCCCGCAATAGAAGGAGGGGTG
CAGCCCCCGGGGCGGGGGGGGGGCAGGAGGAAGGTTCAGGGAGCAAAGATCCCTATAAAC
CAGCCCCAGCCGCTCCTCAGCGCCTGTCCTTGGAGGGGAGGAAACACAGGGACTTGGGGC
TTTGAACCTAAGGTTGTTCCCCTAGTTCTATATGAAGGTGGAGGGTCCCAAGTTCCTTGC
CTCTGAACTCCCAGCCTGCCACAGGCTGGGCTCTTGCGGCTGGACTCATTTGAGATAGGA
GTCACCAGGTGACCAGTGGGAGTCTCCTGCCCCCAGTCAGATGAGAAAACTAGGTCCTGG
GTTAGCTCTGAGGCCATATGTTCCTGGGGGTGGTGGCCTGGTGGGAGCAGGGAACCTAGA
GATCTGGTCTGGGGGGTGGGACAAGGTGGGGTGGNGGGTGGTAATGGGACACTGGGACCA
CCAGTCTTGTCTGTACTGTATGTCGCCAGCATTGCCATACAAACACGAAGCACAATCAGT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
362-468, + strand, RNAmicro p=0.999355 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
362-468, + strand, RNAmicro p=0.999355 |
|
89-435, BP250010A10C2 Soares normalized bovine placenta Bos taurus cDNA
(gb|BF046666.1|), blast E-value=0, identity=86.65% |
|
82-435, BovGen_06804 normal cattle brain Bos taurus cDNA clone (gb|CO878479.1|),
blast E-value=0, identity=86.91% |
|
82-435, 1183802 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN283588.1|),
blast E-value=0, identity=86.91% |
|
82-435, 1240363 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286275.1|),
blast E-value=0, identity=86.91% |
|
82-435, 1407236 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN548963.1|),
blast E-value=0, identity=86.91% |
|
82-435, 001025BEMN034126HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY209216.1|),
blast E-value=0, identity=86.91% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
89-435, BP250010A10C2 Soares normalized bovine placenta Bos taurus cDNA
(gb|BF046666.1|), blast E-value=0, identity=86.65% |
|
82-435, BovGen_06804 normal cattle brain Bos taurus cDNA clone (gb|CO878479.1|),
blast E-value=0, identity=86.91% |
|
82-435, 1183802 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN283588.1|),
blast E-value=0, identity=86.91% |
|
82-435, 1240363 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN286275.1|),
blast E-value=0, identity=86.91% |
|
82-435, 1407236 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN548963.1|),
blast E-value=0, identity=86.91% |
|
82-435, 001025BEMN034126HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY209216.1|),
blast E-value=0, identity=86.91% |
Human gene identifier and UTR site,
human gene reading direction
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
