Non-Coding RNA Search

Ss1.1-rnco1922b_j1.5

Sequence:


               
               GATGACGTGGTCCAGCGCATCGAAGAAGGCGTCGGAGCCCCGGCCCTCGCCCAGCACCGG
CCCCGCCGTGGTCATCTGGTGCGGCAGGATCTGCTTGATGCCGATCTGGTTCGGCGAGTA
GGTGAGGCAGCCGGTGGTGAAGACGAGGAGTTTGTTGCCCACGAAGGCCGAGCCGCGCTC
GGGGGGCTTCGTGCGGCCCTGGGCCAGCAGCTCGGCCACCTTGGTCTCCAGCGCTCGCTC
GGACAGCGGGGGCTGCGCCTGGCCCTCCAGGAGGCCATCCAGGAGGCGCCGCAAGCCCTT
GGTGCGGGCCGGGCCCGGGCTGGCCGCCTCGTCCTCGCCGTCGTCCCTGCTGCCGCCCAG
GTCAAAGACGCGGCTGGGGGCTGCGCCGGGGGCGTCGGCGTCCAGCAGGAGGTCGGGGCT
GTCAAAACGGCTGCAGTCGGCCACCATGACGGTGCGGATGGTGCTGGCGTTGAGATTCTG
GATCTTGAAAAGCCGCTTCACCACGTTCACGTTCTCCGACTCCACGTCTTGGAAGGCGTT
GTTGAGCCAGAGCACCGAGCACGACGTGATGTCGCCGATGCGGTGCAGGTTCCCCGAGAT
CAAGCTCGTGTCCGTGAGCCAGCAGCCAAACACGTCGTAGGGCTTGTTGCGCACGCGGGA
CAGCAGCGCGAAGTTGTCTAGGCTGATGACCGCGATCTCCCCCGAGGAGGAGTTGTGGGG
CCCCAGGAACACCCCCGACGCCAGCAGCAGCGAGTCGTCCTGGTTGAACTGGGAGACCTG
GGTGTAGCTCCAGTTGTAGGGCCGCATGTCCGCGCTGTGCAGCAGCGAGATGGTCAGGTC
GTTGTTCCAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGACGTGGTCCAGCGCATCGAAGAAGGCGTCGGAGCCCCGGCCCTCGCCCAGCACCGG
CCCCGCCGTGGTCATCTGGTGCGGCAGGATCTGCTTGATGCCGATCTGGTTCGGCGAGTA
GGTGAGGCAGCCGGTGGTGAAGACGAGGAGTTTGTTGCCCACGAAGGCCGAGCCGCGCTC
GGGGGGCTTCGTGCGGCCCTGGGCCAGCAGCTCGGCCACCTTGGTCTCCAGCGCTCGCTC
GGACAGCGGGGGCTGCGCCTGGCCCTCCAGGAGGCCATCCAGGAGGCGCCGCAAGCCCTT
GGTGCGGGCCGGGCCCGGGCTGGCCGCCTCGTCCTCGCCGTCGTCCCTGCTGCCGCCCAG
GTCAAAGACGCGGCTGGGGGCTGCGCCGGGGGCGTCGGCGTCCAGCAGGAGGTCGGGGCT
GTCAAAACGGCTGCAGTCGGCCACCATGACGGTGCGGATGGTGCTGGCGTTGAGATTCTG
GATCTTGAAAAGCCGCTTCACCACGTTCACGTTCTCCGACTCCACGTCTTGGAAGGCGTT
GTTGAGCCAGAGCACCGAGCACGACGTGATGTCGCCGATGCGGTGCAGGTTCCCCGAGAT
CAAGCTCGTGTCCGTGAGCCAGCAGCCAAACACGTCGTAGGGCTTGTTGCGCACGCGGGA
CAGCAGCGCGAAGTTGTCTAGGCTGATGACCGCGATCTCCCCCGAGGAGGAGTTGTGGGG
CCCCAGGAACACCCCCGACGCCAGCAGCAGCGAGTCGTCCTGGTTGAACTGGGAGACCTG
GGTGTAGCTCCAGTTGTAGGGCCGCATGTCCGCGCTGTGCAGCAGCGAGATGGTCAGGTC
GTTGTTCCAGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55962655|emb|CAI12741.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55962655|emb|CAI12741.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               402-521, - strand, RNAz p=0.58111

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-521, - strand, RNAz p=0.58111

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_178226, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_178226, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               101-532, gnl|bosTau2|chr11 (86266414-86266836)
               

               
               101-532, gnl|Hg17|chr9 (137112334-137112759)
               

               
               101-532, gnl|Mm7|chr2 (25511178-25510744)
               


               
               640-852, gnl|bosTau2|chr11 (86267142-86267353)
               

               
               640-852, gnl|Hg17|chr9 (137113032-137113232)
               

               
               640-852, gnl|Mm7|chr2 (25510389-25510182)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-532, gnl|bosTau2|chr11 (86266414-86266836)
               

               
               101-532, gnl|Hg17|chr9 (137112334-137112759)
               

               
               101-532, gnl|Mm7|chr2 (25511178-25510744)
               


               
               640-852, gnl|bosTau2|chr11 (86267142-86267353)
               

               
               640-852, gnl|Hg17|chr9 (137113032-137113232)
               

               
               640-852, gnl|Mm7|chr2 (25510389-25510182)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	101-532, gnl\|bosTau2\|chr11 (86266414-86266836)
	101-532, gnl\|Hg17\|chr9 (137112334-137112759)
	101-532, gnl\|Mm7\|chr2 (25511178-25510744)

	640-852, gnl\|bosTau2\|chr11 (86267142-86267353)
	640-852, gnl\|Hg17\|chr9 (137113032-137113232)
	640-852, gnl\|Mm7\|chr2 (25510389-25510182)