Ss1.1-rnco1924b_c4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACACAGGATTAAGAACATGAAGTGCCGTCTAATCAGGGAGTTAAAACGATTCAATGCG GATAACAAACCTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAGCTTTGGTCA TTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGCTTTGAATCTTGGTTT GATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATTGCTAAAGAAAGAGAACAGAAT GTATTGCATATGCTGCACCAGATTTTAACACCTTTCTTACTGAGAAGACTAAAATCTGAT GTTGCCCTTGAAGTTCCTCCTAAACGAGAAGTAGTTGTTTATGCACCACTTTCAAAGAAA CAAGAGGTCTTTTATACAGCCATTGTGAACCGTACAATTACAAACATGTTTGGATCCAGT GAGAAAGAAACAGTTGAGCTAAGTCCCACTGGACGACCAAAACGGAGAACCAGAAAGTCA ATAGATTATAGCAAAATAGATGACTTTCCTAATGAATTGGAAAAGTTGATCAGCCAAATA CAGCCAGAGGTAGACCGAGAAAGAGCTGTTGTGGAAACAAATATTCCTGTAGAATCTGAA GTTAATCTGAAGCTGCAGAATATAATGATGCTACTTCGCAAATGCTGCAATCACCCCTAT TTGATTGAGTACCCTATAGACCCAGTCACACAAGAGTTTAAGATTGATGAAGAATTGGTA ACAAATTCTGGGAAATTCTTAATTTTGGATCGAATGCTGCCAGAACTAAAAATCAGAGGT CACAAGGTGCTGCTTTTTTCACAAATGACAAGAATGTTGGACATTTTGATGGATTACTGT CACTTCAGAAATTTCAACTTTAGCAGGCTCGATGGATCCATGTCTTATACAGAAAGAGAA AAAAATATGCACAGCTTCAACACAGATCCAGATGTGTTTTATCTTTTTAGTGAGTACACG AGCAGGTGGCCTGGGCATTAATTTGACTGCAGCTGATACCGTTATCATTTATGATAGTGA TTGAAATCCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACACAGGATTAAGAACATGAAGTGCCGTCTAATCAGGGAGTTAAAACGATTCAATGCG GATAACAAACCTCTTTTGACTGGTACTCCTTTGCAAAACAATTTATCAGAGCTTTGGTCA TTGCTAAACTTTTTGTTGCCAGATGTATTTGATGACTTGAAAAGCTTTGAATCTTGGTTT GATATCACTAGTCTTTCTGAAACTGCTGAAGATATTATTGCTAAAGAAAGAGAACAGAAT GTATTGCATATGCTGCACCAGATTTTAACACCTTTCTTACTGAGAAGACTAAAATCTGAT GTTGCCCTTGAAGTTCCTCCTAAACGAGAAGTAGTTGTTTATGCACCACTTTCAAAGAAA CAAGAGGTCTTTTATACAGCCATTGTGAACCGTACAATTACAAACATGTTTGGATCCAGT GAGAAAGAAACAGTTGAGCTAAGTCCCACTGGACGACCAAAACGGAGAACCAGAAAGTCA ATAGATTATAGCAAAATAGATGACTTTCCTAATGAATTGGAAAAGTTGATCAGCCAAATA CAGCCAGAGGTAGACCGAGAAAGAGCTGTTGTGGAAACAAATATTCCTGTAGAATCTGAA GTTAATCTGAAGCTGCAGAATATAATGATGCTACTTCGCAAATGCTGCAATCACCCCTAT TTGATTGAGTACCCTATAGACCCAGTCACACAAGAGTTTAAGATTGATGAAGAATTGGTA ACAAATTCTGGGAAATTCTTAATTTTGGATCGAATGCTGCCAGAACTAAAAATCAGAGGT CACAAGGTGCTGCTTTTTTCACAAATGACAAGAATGTTGGACATTTTGATGGATTACTGT CACTTCAGAAATTTCAACTTTAGCAGGCTCGATGGATCCATGTCTTATACAGAAAGAGAA AAAAATATGCACAGCTTCAACACAGATCCAGATGTGTTTTATCTTTTTAGTGAGTACACG AGCAGGTGGCCTGGGCATTAATTTGACTGCAGCTGATACCGTTATCATTTATGATAGTGA TTGAAATCCCCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-164, gnl|bosTau2|chr18 (24663579-24663742) | |
| 1-164, gnl|Hg17|chr10 (96331106-96331269) | |
| 1-164, gnl|Mm7|chr19 (38650905-38651068) | |
| 260-428, gnl|bosTau2|chr18 (24667129-24667297) | |
| 260-428, gnl|Hg17|chr10 (96337974-96338142) | |
| 260-428, gnl|Mm7|chr19 (38654225-38654392) | |
| 562-746, gnl|bosTau2|chr18 (24668582-24668765) | |
| 562-746, gnl|Hg17|chr10 (96340383-96340570) | |
| 562-746, gnl|Mm7|chr19 (38655596-38655779) | |
| 785-906, gnl|bosTau2|chr18 (24670137-24670258) | |
| 785-906, gnl|Hg17|chr10 (96342140-96342261) | |
| 785-906, gnl|Mm7|chr19 (38657880-38658001) | |
| 907-1023, gnl|bosTau2|chr18 (24670847-24670962) | |
| 907-1023, gnl|canFam2|chr28 (11693541-11693622) | |
| 907-1023, gnl|danRer3|chr5 (52115333-52115412) | |
| 907-1023, gnl|dasNov1|scaffold_74260 (2557-2638) | |
| 907-1023, gnl|echTel1|scaffold_293186 (41603-41522) | |
| 907-1023, gnl|fr1|chrUn (96210070-96209989) | |
| 907-1023, gnl|galGal2|chr6 (15729412-15729331) | |
| 907-1023, gnl|hg17|chr10 (96343245-96343326) | |
| 907-1023, gnl|Hg17|chr10 (96343246-96343361) | |
| 907-1023, gnl|loxAfr1|scaffold_16619 (30434-30515) | |
| 907-1023, gnl|mm7|chr19 (38659727-38659808) | |
| 907-1023, gnl|Mm7|chr19 (38659728-38659843) | |
| 907-1023, gnl|monDom2|scaffold_14 (27997328-27997247) | |
| 907-1023, gnl|oryCun1|scaffold_180894 (37521-37599) | |
| 907-1023, gnl|panTro1|chr8 (98100553-98100634) | |
| 907-1023, gnl|rheMac2|chr9 (94064899-94064980) | |
| 907-1023, gnl|rn3|chr1 (243351881-243351962) | |
| 907-1023, gnl|tetNig1|chrUn_random (93172322-93172241) | |
| 907-1023, gnl|xenTro1|scaffold_228 (290316-290235) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-164, gnl|bosTau2|chr18 (24663579-24663742) | |
| 1-164, gnl|Hg17|chr10 (96331106-96331269) | |
| 1-164, gnl|Mm7|chr19 (38650905-38651068) | |
| 260-428, gnl|bosTau2|chr18 (24667129-24667297) | |
| 260-428, gnl|Hg17|chr10 (96337974-96338142) | |
| 260-428, gnl|Mm7|chr19 (38654225-38654392) | |
| 562-746, gnl|bosTau2|chr18 (24668582-24668765) | |
| 562-746, gnl|Hg17|chr10 (96340383-96340570) | |
| 562-746, gnl|Mm7|chr19 (38655596-38655779) | |
| 785-906, gnl|bosTau2|chr18 (24670137-24670258) | |
| 785-906, gnl|Hg17|chr10 (96342140-96342261) | |
| 785-906, gnl|Mm7|chr19 (38657880-38658001) | |
| 907-1023, gnl|bosTau2|chr18 (24670847-24670962) | |
| 907-1023, gnl|canFam2|chr28 (11693541-11693622) | |
| 907-1023, gnl|danRer3|chr5 (52115333-52115412) | |
| 907-1023, gnl|dasNov1|scaffold_74260 (2557-2638) | |
| 907-1023, gnl|echTel1|scaffold_293186 (41603-41522) | |
| 907-1023, gnl|fr1|chrUn (96210070-96209989) | |
| 907-1023, gnl|galGal2|chr6 (15729412-15729331) | |
| 907-1023, gnl|hg17|chr10 (96343245-96343326) | |
| 907-1023, gnl|Hg17|chr10 (96343246-96343361) | |
| 907-1023, gnl|loxAfr1|scaffold_16619 (30434-30515) | |
| 907-1023, gnl|mm7|chr19 (38659727-38659808) | |
| 907-1023, gnl|Mm7|chr19 (38659728-38659843) | |
| 907-1023, gnl|monDom2|scaffold_14 (27997328-27997247) | |
| 907-1023, gnl|oryCun1|scaffold_180894 (37521-37599) | |
| 907-1023, gnl|panTro1|chr8 (98100553-98100634) | |
| 907-1023, gnl|rheMac2|chr9 (94064899-94064980) | |
| 907-1023, gnl|rn3|chr1 (243351881-243351962) | |
| 907-1023, gnl|tetNig1|chrUn_random (93172322-93172241) | |
| 907-1023, gnl|xenTro1|scaffold_228 (290316-290235) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| med (0.116252) |