Non-Coding RNA Search

Ss1.1-rnco1924b_e22.5

Sequence:


               
               TTCATCTGCCTGCTCCCATTCAGACTTCACAACTGTGACATGGGAACCACTATGATCCCA
TTTTACTGCTGGGGAAACTGAGGTTCAGAGAGCTGGACTGCTGCCTCTAGCAGGTCACAC
TGCTAAGACACCAGACTCTGCTGACTTCAGCCCTGGCAGCAGGGAAGGAAGGAGGGTAGA
CAGGAAGTGGGGGCAGGAGGTGGCTGGCTAAGTTTCCTCCAGTCCCCTGTGGGTGGGGGG
ACTTTTTAGAGGGGGGCTGCCAGCCCTGTGGGTGGTTCATCCAGCAGCTGATCTGGACAG
AGTCTTCCCAAACCCTCTCTCCATCTCCCACCCCCATCTACCACTCAGCCAAGCCACAAA
ACTCAGGCGTGGTGCTAGATCCCGGGAATCACATGGGCAGGAGAGGCCTGGCGTTACCCT
TGGGGCTCATGGTCTAAAGGGAGAGATTGAGCCACATTACCGTTGTAGCTCAGCGGTAAT
GAACCCGACTAGTATCCACAAGAACATGGGTTCGATCCCTGGCCTCACTCAGTGGGTTAA
GGATCTGGTGTTGCCCTGAGTTGTGGTGTAGGTTGCAGAGGCAGCTCAGATCTGGCGTTG
CTGTGGGTATGGTGTAGGCCAGCG------------------------------------
------------------------------------AAATAAATAAATAATAGATAAAAT
AAAGAACATGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCATCTGCCTGCTCCCATTCAGACTTCACAACTGTGACATGGGAACCACTATGATCCCA
TTTTACTGCTGGGGAAACTGAGGTTCAGAGAGCTGGACTGCTGCCTCTAGCAGGTCACAC
TGCTAAGACACCAGACTCTGCTGACTTCAGCCCTGGCAGCAGGGAAGGAAGGAGGGTAGA
CAGGAAGTGGGGGCAGGAGGTGGCTGGCTAAGTTTCCTCCAGTCCCCTGTGGGTGGGGGG
ACTTTTTAGAGGGGGGCTGCCAGCCCTGTGGGTGGTTCATCCAGCAGCTGATCTGGACAG
AGTCTTCCCAAACCCTCTCTCCATCTCCCACCCCCATCTACCACTCAGCCAAGCCACAAA
ACTCAGGCGTGGTGCTAGATCCCGGGAATCACATGGGCAGGAGAGGCCTGGCGTTACCCT
TGGGGCTCATGGTCTAAAGGGAGAGATTGAGCCACATTACCGTTGTAGCTCAGCGGTAAT
GAACCCGACTAGTATCCACAAGAACATGGGTTCGATCCCTGGCCTCACTCAGTGGGTTAA
GGATCTGGTGTTGCCCTGAGTTGTGGTGTAGGTTGCAGAGGCAGCTCAGATCTGGCGTTG
CTGTGGGTATGGTGTAGGCCAGCG------------------------------------
------------------------------------AAATAAATAAATAATAGATAAAAT
AAAGAACATGCA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-314, + strand, RNAz p=0.999132
               

               
               42-160, - strand, RNAz p=0.922663

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-314, + strand, RNAz p=0.999132
               

               
               42-160, - strand, RNAz p=0.922663

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-353, gnl|bosTau2|chr17 (34933136-34932795)
               

               
               1-353, gnl|canFam2|chr26 (21288098-21287415)
               

               
               1-353, gnl|echTel1|scaffold_255641 (4911-5525)
               

               
               1-353, gnl|hg17|chr12 (107513176-107513848)
               

               
               1-353, gnl|Hg17|chr12 (107513543-107513201)
               

               
               1-353, gnl|mm7|chr5 (113036789-113037411)
               

               
               1-353, gnl|panTro1|chr10 (110069350-110070023)
               

               
               1-353, gnl|rheMac2|chr11 (109626614-109627286)
               

               
               1-353, gnl|rn3|chr12 (43710664-43709965)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-353, gnl|bosTau2|chr17 (34933136-34932795)
               

               
               1-353, gnl|canFam2|chr26 (21288098-21287415)
               

               
               1-353, gnl|echTel1|scaffold_255641 (4911-5525)
               

               
               1-353, gnl|hg17|chr12 (107513176-107513848)
               

               
               1-353, gnl|Hg17|chr12 (107513543-107513201)
               

               
               1-353, gnl|mm7|chr5 (113036789-113037411)
               

               
               1-353, gnl|panTro1|chr10 (110069350-110070023)
               

               
               1-353, gnl|rheMac2|chr11 (109626614-109627286)
               

               
               1-353, gnl|rn3|chr12 (43710664-43709965)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               duo (0.172801)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               lnt (0.142308)
               

               
               med (0.116252)

	1-314, + strand, RNAz p=0.999132
	42-160, - strand, RNAz p=0.922663

	1-353, gnl\|bosTau2\|chr17 (34933136-34932795)
	1-353, gnl\|canFam2\|chr26 (21288098-21287415)
	1-353, gnl\|echTel1\|scaffold_255641 (4911-5525)
	1-353, gnl\|hg17\|chr12 (107513176-107513848)
	1-353, gnl\|Hg17\|chr12 (107513543-107513201)
	1-353, gnl\|mm7\|chr5 (113036789-113037411)
	1-353, gnl\|panTro1\|chr10 (110069350-110070023)
	1-353, gnl\|rheMac2\|chr11 (109626614-109627286)
	1-353, gnl\|rn3\|chr12 (43710664-43709965)