Non-Coding RNA Search

Ss1.1-rnco1925b_j20.5

Sequence:


               
               CTAGTTCCGGACGCGGCGGCCGCCGCCGCCATCTGTCACCTCAGCTCCGGCGTCAGCAGC
CCGTCGCCCCTGCCCCACCGCCTCTCTCCTCGACGGAAGCTGCTTCCCTGTCCTGCCACC
TCTCTGCTCTGTTTCCGTCGCTGTCTTCTTCCCTCACATGGATCTGGTCGGAGTTGCATC
CCCTGAGCCCGGGCCCGCAGCGGCCTGGGGACCCAACAAGTGTCCATGGGCTACCCCTCA
AAATACAATATCTTGTTCTTTGTCTGATGTAATGAGTGAACAGTTGGCTAAAGAATTGCA
GTTAGAAGAAGAAGCTGCCGCTTTTCCTGAAGTTGCTGTTGCTGAAGGACCATTTATTAC
TGGAGAAAACATTGACACCTCCAGCGACCTAATGCTGGCTCAGATGCTACAGATGGAATT
TGACAGAGAATATGATGCACAGCTTAGGCGTGAAGAAAAAAAATTCAATGGAGATAGCAA
AGTTTCCATTTCCTTTGAAAATTATCGAAAAGTGCATCCTTATGAAGACAGTGATAGCTC
TGAAGATGAGGTTGACTGGCAGGATACTCGTGATGACCCCTACAGACCAGCAAAACCAGT
TCCTACTCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAGTTCCGGACGCGGCGGCCGCCGCCGCCATCTGTCACCTCAGCTCCGGCGTCAGCAGC
CCGTCGCCCCTGCCCCACCGCCTCTCTCCTCGACGGAAGCTGCTTCCCTGTCCTGCCACC
TCTCTGCTCTGTTTCCGTCGCTGTCTTCTTCCCTCACATGGATCTGGTCGGAGTTGCATC
CCCTGAGCCCGGGCCCGCAGCGGCCTGGGGACCCAACAAGTGTCCATGGGCTACCCCTCA
AAATACAATATCTTGTTCTTTGTCTGATGTAATGAGTGAACAGTTGGCTAAAGAATTGCA
GTTAGAAGAAGAAGCTGCCGCTTTTCCTGAAGTTGCTGTTGCTGAAGGACCATTTATTAC
TGGAGAAAACATTGACACCTCCAGCGACCTAATGCTGGCTCAGATGCTACAGATGGAATT
TGACAGAGAATATGATGCACAGCTTAGGCGTGAAGAAAAAAAATTCAATGGAGATAGCAA
AGTTTCCATTTCCTTTGAAAATTATCGAAAAGTGCATCCTTATGAAGACAGTGATAGCTC
TGAAGATGAGGTTGACTGGCAGGATACTCGTGATGACCCCTACAGACCAGCAAAACCAGT
TCCTACTCCCAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-113, - strand, RNAz p=0.556912

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-113, - strand, RNAz p=0.556912

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-220, gnl|bosTau2|chr24 (24537868-24538086)
               

               
               1-220, gnl|canFam2|chr7 (67902213-67901783)
               

               
               1-220, gnl|dasNov1|scaffold_4061 (45533-45159)
               

               
               1-220, gnl|echTel1|scaffold_315217 (98219-98656)
               

               
               1-220, gnl|hg17|chr18 (19287043-19287488)
               

               
               1-220, gnl|Hg17|chr18 (19287247-19287464)
               

               
               1-220, gnl|loxAfr1|scaffold_7386 (7612-8033)
               

               
               1-220, gnl|mm7|chr18 (12478538-12478939)
               

               
               1-220, gnl|Mm7|chr18 (12478691-12478911)
               

               
               1-220, gnl|monDom2|scaffold_21 (38679896-38680362)
               

               
               1-220, gnl|oryCun1|scaffold_89019 (10223-9790)
               

               
               1-220, gnl|panTro1|chr17 (15202710-15203164)
               

               
               1-220, gnl|rheMac2|chr18 (16475825-16476271)
               

               
               1-220, gnl|rn3|chr18 (3673556-3673960)
               


               
               337-495, gnl|bosTau2|chr24 (24544467-24544625)
               

               
               337-495, gnl|Hg17|chr18 (19297929-19298087)
               

               
               337-495, gnl|Mm7|chr18 (12486631-12486788)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-220, gnl|bosTau2|chr24 (24537868-24538086)
               

               
               1-220, gnl|canFam2|chr7 (67902213-67901783)
               

               
               1-220, gnl|dasNov1|scaffold_4061 (45533-45159)
               

               
               1-220, gnl|echTel1|scaffold_315217 (98219-98656)
               

               
               1-220, gnl|hg17|chr18 (19287043-19287488)
               

               
               1-220, gnl|Hg17|chr18 (19287247-19287464)
               

               
               1-220, gnl|loxAfr1|scaffold_7386 (7612-8033)
               

               
               1-220, gnl|mm7|chr18 (12478538-12478939)
               

               
               1-220, gnl|Mm7|chr18 (12478691-12478911)
               

               
               1-220, gnl|monDom2|scaffold_21 (38679896-38680362)
               

               
               1-220, gnl|oryCun1|scaffold_89019 (10223-9790)
               

               
               1-220, gnl|panTro1|chr17 (15202710-15203164)
               

               
               1-220, gnl|rheMac2|chr18 (16475825-16476271)
               

               
               1-220, gnl|rn3|chr18 (3673556-3673960)
               


               
               337-495, gnl|bosTau2|chr24 (24544467-24544625)
               

               
               337-495, gnl|Hg17|chr18 (19297929-19298087)
               

               
               337-495, gnl|Mm7|chr18 (12486631-12486788)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               ste (0.135208)
               

               
               ldo (0.0970026)

	1-220, gnl\|bosTau2\|chr24 (24537868-24538086)
	1-220, gnl\|canFam2\|chr7 (67902213-67901783)
	1-220, gnl\|dasNov1\|scaffold_4061 (45533-45159)
	1-220, gnl\|echTel1\|scaffold_315217 (98219-98656)
	1-220, gnl\|hg17\|chr18 (19287043-19287488)
	1-220, gnl\|Hg17\|chr18 (19287247-19287464)
	1-220, gnl\|loxAfr1\|scaffold_7386 (7612-8033)
	1-220, gnl\|mm7\|chr18 (12478538-12478939)
	1-220, gnl\|Mm7\|chr18 (12478691-12478911)
	1-220, gnl\|monDom2\|scaffold_21 (38679896-38680362)
	1-220, gnl\|oryCun1\|scaffold_89019 (10223-9790)
	1-220, gnl\|panTro1\|chr17 (15202710-15203164)
	1-220, gnl\|rheMac2\|chr18 (16475825-16476271)
	1-220, gnl\|rn3\|chr18 (3673556-3673960)

	337-495, gnl\|bosTau2\|chr24 (24544467-24544625)
	337-495, gnl\|Hg17\|chr18 (19297929-19298087)
	337-495, gnl\|Mm7\|chr18 (12486631-12486788)